Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5756

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5755: 14123 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 868685 to 870428 14123 mRNA_5756: 14124 - HMMPfam-Myb-like DNA-binding domain-PF00249,ProSiteProfiles-Myb-like domain profile.-PS50090,ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 870782 to 872057 14124 mRNA_5757: 14125 - HMMPfam-Glycosyl hydrolase catalytic core-PF11790,SUPERFAMILY--SSF51445, at 872220 to 874136 14125

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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869,816 - 14123 mRNA_5755 0.65 -1.1
869,818 - 14123 mRNA_5755 0.65 0.3
869,848 + 14123 mRNA_5755 0.67 0.3
869,983 - 14123 mRNA_5755 0.74 -0.8
870,019 - 14123 mRNA_5755 0.76 -0.8
870,246 - 14123 mRNA_5755 0.90 -0.4
870,268 + -1.3
870,308 - -0.5
870,414 - 1.1
870,535 - -1.3
870,682 - -1.1
870,722 + -0.3
870,724 + 0.1
870,726 + 1.1
870,751 + 0.4
870,787 + 0.2
870,876 + -1.0
870,881 - 1.6
871,154 - 14124 mRNA_5756 0.29 0.8
871,486 - 14124 mRNA_5756 0.55 0.6
871,612 + 14124 mRNA_5756 0.65 2.0
871,774 - 14124 mRNA_5756 0.78 0.6
871,908 - 14124 mRNA_5756 0.88 0.7
872,034 - 3.0
872,074 + -0.1
872,718 - 14125 mRNA_5757 0.26 0.3
872,720 - 14125 mRNA_5757 0.26 -0.0
872,778 - 14125 mRNA_5757 0.29 0.4
872,789 + 14125 mRNA_5757 0.30 -0.2
872,905 + 14125 mRNA_5757 0.36 2.4