Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5720

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5719: 14087 - K00290 LYS1 saccharopine dehydrogenase (NAD+, L-lysine forming), at 765726 to 767088 14087 mRNA_5720: 14088 - K04392 RAC1 Ras-related C3 botulinum toxin substrate 1, at 767473 to 768381 14088 mRNA_5721: 14089 - K19219 JMJD7 jumonji domain-containing protein 7, at 768732 to 770042 14089

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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767,145 - 2.5
767,293 - 0.0
767,300 + 0.3
767,306 + -0.6
767,440 + -1.5
767,443 - 1.3
767,443 - 1.5
767,477 + -1.2
767,480 + 1.6
767,591 - 14088 mRNA_5720 0.13 -1.2
767,596 + 14088 mRNA_5720 0.14 1.1
767,600 + 14088 mRNA_5720 0.14 -1.3
767,602 + 14088 mRNA_5720 0.14 -2.8
767,605 - 14088 mRNA_5720 0.15 -1.0
767,635 + 14088 mRNA_5720 0.18 -0.2
768,751 - 1.7
769,199 - 14089 mRNA_5721 0.36 1.6
769,237 + 14089 mRNA_5721 0.39 -1.3