Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5705

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5704: 14072 - KOG2483 Upstream transcription factor 2/L-myc-2 protein, at 728026 to 730424 14072 mRNA_5705: 14073 - HMMPfam-Cysteine-rich secretory protein family-PF00188,SUPERFAMILY--SSF55797, at 731059 to 731970 14073 mRNA_5706: 14074 - Hypothetical Protein, at 731945 to 733165 14074

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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730,270 - 0.1
730,321 - 0.6
730,477 - 0.9
730,570 - 0.9
730,666 - -0.1
730,720 + -0.7
730,732 + 1.8
730,750 + 0.7
730,890 + -0.3
730,902 + 1.6
730,911 - 0.5
731,155 - 14073 mRNA_5705 0.11 1.0
731,181 - 14073 mRNA_5705 0.13 0.9
731,212 + 14073 mRNA_5705 0.17 1.5
731,802 - 14073 mRNA_5705 0.81 1.1
732,081 + 14074 mRNA_5706 0.11 0.5
732,085 - 14074 mRNA_5706 0.11 0.9
732,360 + 14074 mRNA_5706 0.34 2.4
732,377 + 14074 mRNA_5706 0.35 1.0
732,381 + 14074 mRNA_5706 0.36 0.3
732,655 + 14074 mRNA_5706 0.58 -0.3
732,675 + 14074 mRNA_5706 0.60 -0.2
732,845 + 14074 mRNA_5706 0.74 0.8