Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5687

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5686: 14054 - K05294 PGAP1 glycosylphosphatidylinositol deacylase, at 690842 to 694591 14054 mRNA_5687: 14055 - K08764 SCP2, SCPX sterol carrier protein 2, at 694932 to 696791 14055 mRNA_5688: 14056 - K12199 VTA1, LIP5 vacuolar protein sorting-associated protein VTA1, at 697061 to 698504 14056

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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694,123 - 14054 mRNA_5686 0.87 -1.4
694,240 - -0.8
694,518 + -0.1
694,526 - 0.1
694,649 + 1.3
694,672 + 3.2
694,673 + 0.8
694,706 - 2.2
694,706 - 0.0
694,708 - 0.8
694,727 - -2.8
694,743 + 0.3
694,748 - 0.4
695,043 + -0.2
695,160 - 14055 mRNA_5687 0.12 0.3
695,322 - 14055 mRNA_5687 0.21 0.7
695,458 - 14055 mRNA_5687 0.28 1.0
695,788 + 14055 mRNA_5687 0.46 -0.1
696,339 - 14055 mRNA_5687 0.76 -1.4
696,597 - 14055 mRNA_5687 0.90 0.3
696,778 - -0.8
696,904 - -0.5
696,918 - 0.2
697,523 + 14056 mRNA_5688 0.32 -0.1
697,669 + 14056 mRNA_5688 0.42 0.8