Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5684

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5683: 14051 - K15505 RAD5 DNA repair protein RAD5, at 683055 to 687923 14051 mRNA_5684: 14052 - K07404 pgl 6-phosphogluconolactonase, at 687998 to 689292 14052 mRNA_5685: 14053 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 689401 to 690702 14053

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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687,000 + 14051 mRNA_5683 0.81 0.6
687,144 + 14051 mRNA_5683 0.84 -0.3
687,294 + 14051 mRNA_5683 0.87 0.7
687,367 + 14051 mRNA_5683 0.89 -0.3
687,490 + -0.5
687,504 + -0.0
687,609 - -0.6
688,016 + 0.6
688,169 - 14052 mRNA_5684 0.13 1.2
688,197 + 14052 mRNA_5684 0.15 0.3
688,416 - 14052 mRNA_5684 0.32 0.7
688,488 - 14052 mRNA_5684 0.38 0.5
688,494 - 14052 mRNA_5684 0.38 -0.7
688,756 + 14052 mRNA_5684 0.59 -0.1
688,764 - 14052 mRNA_5684 0.59 0.7
688,776 - 14052 mRNA_5684 0.60 -2.2
688,778 - 14052 mRNA_5684 0.60 0.7
688,782 - 14052 mRNA_5684 0.61 -0.1
688,784 + 14052 mRNA_5684 0.61 0.7
688,795 + 14052 mRNA_5684 0.62 -0.1
688,933 - 14052 mRNA_5684 0.72 0.6
689,057 - 14052 mRNA_5684 0.82 -1.9
689,069 - 14052 mRNA_5684 0.83 -0.2
689,098 + 14052 mRNA_5684 0.85 0.3
689,206 - 0.6
689,210 - -0.5
689,227 + 1.5
689,245 + 1.4
689,254 - -0.5
689,385 + 1.1
689,402 - 0.8
690,241 - 14053 mRNA_5685 0.65 1.2