Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5678

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5677: 14045 - K15901 CGI121, TPRKB EKC/KEOPS complex subunit CGI121/TPRKB, at 672495 to 673304 14045 mRNA_5678: 14046 - K06005 SAP candidapepsin, at 673852 to 675422 14046 mRNA_5679: 14047 - KOG1944 Peroxisomal membrane protein MPV17 and related proteins, at 675766 to 676852 14047

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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672,887 + 14045 mRNA_5677 0.48 0.5
672,891 - 14045 mRNA_5677 0.49 1.0
672,896 + 14045 mRNA_5677 0.50 -0.5
672,903 - 14045 mRNA_5677 0.50 -0.1
672,910 + 14045 mRNA_5677 0.51 1.2
673,040 + 14045 mRNA_5677 0.67 1.9
673,049 - 14045 mRNA_5677 0.68 -1.4
673,050 + 14045 mRNA_5677 0.69 0.1
673,051 - 14045 mRNA_5677 0.69 -0.4
673,072 - 14045 mRNA_5677 0.71 -0.2
673,347 + 1.3
673,458 - -0.6
673,493 + 1.2
673,628 - 0.6
673,631 - -1.5
673,645 + 0.6
673,651 - -0.9
673,657 - -0.7
673,661 + 0.5
673,662 + -0.4
673,670 + -0.0
673,673 - -0.8
673,678 + -1.9
673,680 - 0.7
673,680 + -1.4
673,680 - 0.3
673,684 + 1.1
673,703 - 0.9
673,707 + 0.9
673,709 + 2.6
673,710 + 0.5
673,721 + 0.6
673,740 - 1.8
673,796 - -0.0
673,797 + -0.2
673,798 + 0.3
673,831 + -0.1
673,861 - 0.5
673,890 + -2.0
673,911 + 1.0
673,911 + -0.3
674,048 + 14046 mRNA_5678 0.12 1.7
674,221 - 14046 mRNA_5678 0.23 0.0
674,351 - 14046 mRNA_5678 0.32 -0.2
674,354 + 14046 mRNA_5678 0.32 -0.2
674,360 - 14046 mRNA_5678 0.32 0.2
674,461 + 14046 mRNA_5678 0.39 -0.2
674,811 - 14046 mRNA_5678 0.61 0.9
674,817 - 14046 mRNA_5678 0.61 1.9
674,818 + 14046 mRNA_5678 0.61 1.4
675,042 + 14046 mRNA_5678 0.76 2.0
675,095 + 14046 mRNA_5678 0.79 1.2
675,215 - 14046 mRNA_5678 0.87 2.6
675,492 + 1.1
675,542 + -0.6
675,585 - 1.0
675,654 + 2.4
676,395 + 14047 mRNA_5679 0.58 0.3