Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5667

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5667: 14035 - K11233 SSK1 osomolarity two-component system, response regulator SSK1, at 642793 to 648199 14035 mRNA_5668: 14036 - K01227 E3.2.1.96 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase, at 648393 to 650754 14036

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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642,214 + 1.1
642,244 + 0.5
642,354 - 2.4
642,607 + 0.5
642,643 - 2.2
642,654 - -0.3
642,656 - 1.6
642,666 + 0.9
642,674 - 0.3
642,686 - -0.5
642,812 - -0.2
642,822 + -1.5
644,521 + 14035 mRNA_5667 0.32 1.0
644,605 + 14035 mRNA_5667 0.34 0.7
645,754 - 14035 mRNA_5667 0.55 -1.2
646,708 + 14035 mRNA_5667 0.72 0.4
646,810 - 14035 mRNA_5667 0.74 -1.6
647,048 + 14035 mRNA_5667 0.79 0.9
647,500 + 14035 mRNA_5667 0.87 1.6
647,524 + 14035 mRNA_5667 0.87 0.4
647,639 + 14035 mRNA_5667 0.90 0.2
647,807 + -1.8
648,379 + 1.0
648,742 + 14036 mRNA_5668 0.15 -1.5
648,868 + 14036 mRNA_5668 0.20 1.1
649,135 + 14036 mRNA_5668 0.31 -0.7
649,147 - 14036 mRNA_5668 0.32 -0.9