Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5632

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5631: 13999 - KOG4197 FOG PPR repeat, at 552322 to 556680 13999 mRNA_5632: 14000 - Hypothetical Protein, at 557069 to 557641 14000 mRNA_5633: 14001 - K01679 E4.2.1.2B, fumC fumarate hydratase, class II, at 558284 to 560290 14001

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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556,438 - 2.7
556,528 - 1.1
556,568 + 0.8
556,658 - 2.7
556,685 + -0.4
556,831 - -0.0
556,949 + -0.5
557,273 - 14000 mRNA_5632 0.36 -0.7
557,280 - 14000 mRNA_5632 0.37 -0.7
557,288 + 14000 mRNA_5632 0.38 1.3
557,293 + 14000 mRNA_5632 0.39 -0.3
557,293 + 14000 mRNA_5632 0.39 0.2
557,300 + 14000 mRNA_5632 0.40 -0.2
557,419 + 14000 mRNA_5632 0.61 0.8
557,437 + 14000 mRNA_5632 0.64 0.2
557,446 + 14000 mRNA_5632 0.66 0.9
557,704 + 0.5
557,739 - 0.3
557,742 + -0.6
557,870 - 1.9
557,882 - 1.2
557,886 - 0.1
557,892 - 0.6
558,052 - 0.6
558,073 - -0.4
558,076 - -1.0
558,180 - 2.1
558,195 - -0.5
558,195 - -0.2
558,199 + 0.9
558,200 - -0.4