Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5628

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5627: 13995 - K10756 RFC3_5 replication factor C subunit 3/5, at 539729 to 541360 13995 mRNA_5628: 13996 - SUPERFAMILY--SSF57997, at 541523 to 547167 13996 mRNA_5629: 13997 - K15430 TRM11, TRMT11 tRNA (guanine10-N2)-methyltransferase, at 547536 to 549644 13997

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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541,416 - 1.2
541,421 + 0.1
541,421 + 1.7
541,421 + 0.1
541,421 + 0.5
541,435 - -0.8
541,455 + 0.2
541,543 - 0.8
541,567 + -0.2
541,582 + 0.4
541,729 - 0.7
541,754 + 0.9
541,847 + -0.5
541,862 - 0.9
541,893 - -1.7
541,900 - 0.6
542,004 + 1.4
542,149 + 13996 mRNA_5628 0.11 0.6
542,191 + 13996 mRNA_5628 0.12 1.2
542,584 - 13996 mRNA_5628 0.19 -0.4
542,708 + 13996 mRNA_5628 0.21 -0.2
542,730 + 13996 mRNA_5628 0.21 -1.2
543,167 + 13996 mRNA_5628 0.29 -1.1
543,208 + 13996 mRNA_5628 0.30 0.0
543,638 + 13996 mRNA_5628 0.37 0.1
543,677 + 13996 mRNA_5628 0.38 0.9
543,830 - 13996 mRNA_5628 0.41 0.5
544,249 - 13996 mRNA_5628 0.48 0.2
544,439 - 13996 mRNA_5628 0.52 -1.4
544,494 - 13996 mRNA_5628 0.53 1.3
544,938 + 13996 mRNA_5628 0.60 0.7
544,977 + 13996 mRNA_5628 0.61 1.2
545,122 + 13996 mRNA_5628 0.64 0.1
545,318 - 13996 mRNA_5628 0.67 1.4
545,504 + 13996 mRNA_5628 0.71 0.5
545,522 - 13996 mRNA_5628 0.71 0.7
545,601 + 13996 mRNA_5628 0.72 0.9
545,860 - 13996 mRNA_5628 0.77 1.9
546,145 - 13996 mRNA_5628 0.82 1.2
546,222 + 13996 mRNA_5628 0.83 0.8
546,301 + 13996 mRNA_5628 0.85 -0.7
546,586 - 13996 mRNA_5628 0.90 1.5
546,588 + 13996 mRNA_5628 0.90 -0.4
546,603 + 0.9
546,737 - 1.3
546,885 + 0.2
546,985 - 0.2
547,313 + 2.7
547,328 - -0.2
547,340 + 1.8
547,379 + 1.7
547,464 - 1.2
547,473 - -1.0
547,476 - -0.6
547,478 + -1.0
547,521 - 1.1
547,627 - 0.4
547,787 - 13997 mRNA_5629 0.12 0.1
547,909 + 13997 mRNA_5629 0.18 0.4
547,918 - 13997 mRNA_5629 0.18 2.2
548,058 - 13997 mRNA_5629 0.25 0.4
548,090 + 13997 mRNA_5629 0.26 -0.7
548,109 - 13997 mRNA_5629 0.27 -1.0