Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5587

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5586: 13954 - HMMPfam-Response regulator receiver domain-PF00072,HMMPfam-Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase-PF02518,ProSiteProfiles-Response regulatory domain profile.-PS50110,SMART-cheY-homologous receiver domain-SM00448,SUPERFAMILY--SSF52172,SUPERFAMILY--SSF55874, at 440845 to 442225 13954 mRNA_5587: 13955 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 442460 to 444934 13955 mRNA_5588: 13956 - K04646 CLTC clathrin heavy chain, at 445345 to 451026 13956

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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441,679 - 13954 mRNA_5586 0.60 0.4
441,683 + 13954 mRNA_5586 0.61 -0.4
442,074 + 13954 mRNA_5586 0.89 -1.6
442,339 - -0.3
442,397 + -0.0
442,398 + 0.2
442,400 + -0.7
442,401 - 0.7
442,408 + 1.1
442,419 - -0.7
442,425 - 0.1
442,539 - 0.8
442,544 - 1.3
442,557 - 0.7
443,475 + 13955 mRNA_5587 0.41 -0.7
443,595 + 13955 mRNA_5587 0.46 1.2
443,862 - 13955 mRNA_5587 0.57 -0.7
443,889 - 13955 mRNA_5587 0.58 0.8
444,296 - 13955 mRNA_5587 0.74 -0.2
444,308 + 13955 mRNA_5587 0.75 1.5
444,339 + 13955 mRNA_5587 0.76 0.1
444,496 - 13955 mRNA_5587 0.82 1.8
444,601 - 13955 mRNA_5587 0.87 0.9
444,632 + 13955 mRNA_5587 0.88 1.7
444,654 + 13955 mRNA_5587 0.89 1.4
444,670 - 13955 mRNA_5587 0.89 -0.4
444,952 - 1.4
445,119 - -0.0
445,124 + -0.3
445,146 + 2.7
445,235 + -2.4
445,249 - -0.7
445,277 - 2.6
445,586 - -0.2