Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5577

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5576: 13944 - Interpro GDP-fucose protein O-fucosyltransferase, at 415685 to 417537 13944 mRNA_5577: 13945 - Hypothetical Protein, at 418154 to 419235 13945 mRNA_5578: 13946 - HMMPfam-HMG (high mobility group) box-PF00505,ProSiteProfiles-HMG boxes A and B DNA-binding domains profile.-PS50118,SMART-high mobility group-SM00398,SUPERFAMILY--SSF47095, at 419632 to 421061 13946

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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417,566 - 0.1
417,972 - 2.6
418,407 - 13945 mRNA_5577 0.23 0.2
418,835 - 13945 mRNA_5577 0.63 -0.7
418,836 - 13945 mRNA_5577 0.63 1.7
418,967 - 13945 mRNA_5577 0.75 0.7
419,001 - 13945 mRNA_5577 0.78 -0.3
419,140 - -1.8
419,140 - 1.2
419,258 - -2.0
419,273 + 2.5
419,404 - 2.7
419,415 + 0.8
419,416 + 0.8
419,420 - 0.9
419,435 + -0.4
419,437 + 1.1
419,449 - 1.1
419,519 - -0.7
419,542 - -0.1
419,542 - 0.2
419,548 - -0.3
419,549 + -0.2
419,550 + 1.7
419,555 - 1.6
419,558 + 0.3
419,558 + 1.4
419,559 - 1.0
419,561 + -0.3
419,565 + 0.9
419,568 + -0.5
419,568 + 1.4
419,570 - 1.1
419,571 - 1.4
419,572 - -1.6
419,572 + 0.7
419,575 - 0.7
419,581 + -1.2
419,588 + 1.0
419,590 + 0.2
419,590 - 0.7
419,591 + 2.2
419,595 + -0.1
419,596 + 2.1
419,605 + -0.8