Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5571

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5570: 13938 - K06067 HDAC1_2 histone deacetylase 1/2, at 399570 to 402274 13938 mRNA_5571: 13939 - K14546 UTP5, WDR43 U3 small nucleolar RNA-associated protein 5, at 402481 to 405282 13939 mRNA_5572: 13940 - K18730 GIGYF PERQ amino acid-rich with GYF domain-containing protein, at 405680 to 409565 13940

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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401,962 + 13938 mRNA_5570 0.88 1.6
401,979 + 13938 mRNA_5570 0.89 1.6
402,095 - -0.3
402,097 - -1.7
402,100 + -0.1
402,116 + 2.1
402,240 - -0.8
402,293 + -1.5
403,864 + 13939 mRNA_5571 0.49 0.9
405,223 + 0.8
405,246 + 0.6
405,340 + 0.8
405,357 - -1.2
405,363 + 0.2
405,368 + -3.0
405,491 + 0.2
405,505 + 0.4
405,517 + 1.2
405,520 - 0.8
405,522 + 0.2
405,526 - 0.4
405,528 + 0.1
405,666 + -0.2
405,763 - -1.4
405,784 - 0.1
405,826 - -0.6
405,838 + -0.7
405,959 + -2.3
405,961 + -1.8
406,097 - 13940 mRNA_5572 0.11 -1.7
406,243 + 13940 mRNA_5572 0.14 0.1