Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5570

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5569: 13937 - BLAST pria protein [Moniliophthora roreri MCA 2997], at 397579 to 399010 13937 mRNA_5570: 13938 - K06067 HDAC1_2 histone deacetylase 1/2, at 399570 to 402274 13938 mRNA_5571: 13939 - K14546 UTP5, WDR43 U3 small nucleolar RNA-associated protein 5, at 402481 to 405282 13939

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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398,705 - 13937 mRNA_5569 0.79 -2.2
398,859 - 13937 mRNA_5569 0.89 -0.1
398,872 - 0.4
398,925 + -0.1
399,269 - -0.1
399,278 - 0.3
399,294 + 2.4
399,294 + -0.4
399,338 + -0.3
399,421 - 0.4
399,425 - -0.6
399,432 - -0.4
399,437 - 0.1
399,446 + -2.6
399,457 - 0.3
399,464 - 0.5
401,962 + 13938 mRNA_5570 0.88 1.6
401,979 + 13938 mRNA_5570 0.89 1.6
402,095 - -0.3
402,097 - -1.7
402,100 + -0.1
402,116 + 2.1
402,240 - -0.8
402,293 + -1.5