Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5569

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5568: 13936 - Hypothetical Protein, at 396764 to 397075 13936 mRNA_5569: 13937 - BLAST pria protein [Moniliophthora roreri MCA 2997], at 397579 to 399010 13937 mRNA_5570: 13938 - K06067 HDAC1_2 histone deacetylase 1/2, at 399570 to 402274 13938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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396,619 - -0.4
396,781 + 0.4
396,782 + -0.0
396,927 - 13936 mRNA_5568 0.52 -0.6
397,169 - 0.3
397,209 + 0.4
397,220 - 0.1
397,324 - 1.1
397,343 - -0.2
397,346 + -1.7
397,347 + -0.2
397,371 - 1.5
397,465 + -1.8
397,480 - 1.2
397,487 + 0.9
397,496 + 0.4
397,507 - 2.0
397,508 - 0.2
397,510 + -0.6
397,514 - 0.8
397,514 - 0.6
397,524 - 1.4
397,526 - 0.7
397,531 - -1.2
397,533 - -0.3
397,533 - -0.6
397,654 + -0.4
397,659 - 0.5
397,661 - 0.4
397,667 - -0.2
397,669 + -0.4
397,670 + 1.6
397,734 + 13937 mRNA_5569 0.11 0.4
397,786 + 13937 mRNA_5569 0.14 -0.3
397,802 - 13937 mRNA_5569 0.16 -0.3
397,813 + 13937 mRNA_5569 0.16 -1.0
397,814 - 13937 mRNA_5569 0.16 1.2
397,815 - 13937 mRNA_5569 0.16 -0.4
397,815 - 13937 mRNA_5569 0.16 0.7
397,837 - 13937 mRNA_5569 0.18 0.5
397,837 + 13937 mRNA_5569 0.18 1.0
397,855 - 13937 mRNA_5569 0.19 1.5
397,882 - 13937 mRNA_5569 0.21 2.2
397,979 + 13937 mRNA_5569 0.28 1.1
398,260 - 13937 mRNA_5569 0.48 0.5
398,269 + 13937 mRNA_5569 0.48 1.1
398,542 - 13937 mRNA_5569 0.67 -0.2
398,705 - 13937 mRNA_5569 0.79 -2.2
398,859 - 13937 mRNA_5569 0.89 -0.1
398,872 - 0.4
398,925 + -0.1
399,269 - -0.1
399,278 - 0.3
399,294 + 2.4
399,294 + -0.4
399,338 + -0.3
399,421 - 0.4
399,425 - -0.6
399,432 - -0.4
399,437 - 0.1
399,446 + -2.6
399,457 - 0.3
399,464 - 0.5