Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5424

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5423: 13791 - K01426 E3.5.1.4, amiE amidase, at 65728 to 67986 13791 mRNA_5424: 13792 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 68468 to 70424 13792 mRNA_5425: 13793 - K12735 PPIL4 peptidyl-prolyl cis-trans isomerase-like 4, at 70571 to 72264 13793

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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67,542 + 13791 mRNA_5423 0.80 0.7
67,594 + 13791 mRNA_5423 0.83 -0.3
67,898 - -1.5
67,981 + 0.7
67,986 - 0.1
68,002 + 0.1
68,037 + -1.2
68,037 + 0.0
68,130 - 0.8
68,130 - 1.1
68,138 - -0.3
68,157 - -0.7
68,158 - -0.6
68,293 + 1.8
68,302 + -0.2
68,327 + 0.2
68,427 - -0.5
68,545 + 0.8
68,574 + -0.1
68,732 + 13792 mRNA_5424 0.13 -1.2
68,756 + 13792 mRNA_5424 0.15 2.3
68,756 + 13792 mRNA_5424 0.15 0.6
68,759 - 13792 mRNA_5424 0.15 0.2
68,895 - 13792 mRNA_5424 0.22 -0.6
68,898 + 13792 mRNA_5424 0.22 0.1
68,901 + 13792 mRNA_5424 0.22 2.3
68,975 - 13792 mRNA_5424 0.26 0.3
69,139 + 13792 mRNA_5424 0.34 0.6
69,232 - 13792 mRNA_5424 0.39 0.2
69,381 - 13792 mRNA_5424 0.47 1.1
69,500 - 13792 mRNA_5424 0.53 -0.6
69,516 + 13792 mRNA_5424 0.54 0.3
69,516 + 13792 mRNA_5424 0.54 0.3
69,709 + 13792 mRNA_5424 0.63 -0.1
69,757 + 13792 mRNA_5424 0.66 1.0
69,820 - 13792 mRNA_5424 0.69 1.3
69,873 + 13792 mRNA_5424 0.72 -0.3
69,891 + 13792 mRNA_5424 0.73 -2.5
70,010 + 13792 mRNA_5424 0.79 0.6
70,045 - 13792 mRNA_5424 0.81 -0.2
70,153 + 13792 mRNA_5424 0.86 1.8
70,186 - 13792 mRNA_5424 0.88 0.9
70,186 - 13792 mRNA_5424 0.88 -0.1
70,234 + 0.6
70,343 - 0.6
70,343 + 1.1
70,494 - -1.6
70,512 - 0.5
70,535 + 1.5
70,724 - 0.2
70,810 - 13793 mRNA_5425 0.14 0.8
70,925 - 13793 mRNA_5425 0.21 -0.0
71,048 - 13793 mRNA_5425 0.28 0.3