Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5420

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5419: 13787 - Interpro Cut8, nuclear proteasome tether protein, at 58738 to 60106 13787 mRNA_5420: 13788 - Hypothetical Protein, at 60457 to 62427 13788 mRNA_5421: 13789 - Interpro Domain of unknown function (DUF5102) 0, at 62877 to 64571 13789

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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59,511 + 13787 mRNA_5419 0.56 2.5
59,516 - 13787 mRNA_5419 0.57 -0.5
59,547 - 13787 mRNA_5419 0.59 0.8
59,547 - 13787 mRNA_5419 0.59 -0.4
59,554 + 13787 mRNA_5419 0.60 0.6
59,664 - 13787 mRNA_5419 0.68 0.2
59,749 - 13787 mRNA_5419 0.74 -1.3
59,831 + 13787 mRNA_5419 0.80 -1.2
59,849 - 13787 mRNA_5419 0.81 0.5
59,870 - 13787 mRNA_5419 0.83 1.0
60,011 + 1.7
60,012 + -0.8
60,012 + 0.2
60,019 + 1.8
60,116 - 2.3
60,260 + -0.5
60,289 + 0.7
60,292 - 1.6
60,306 - 0.1
60,320 + 0.7
60,596 + -0.3
60,598 - 0.0
60,688 + 13788 mRNA_5420 0.12 0.1
60,786 - 13788 mRNA_5420 0.17 1.0
60,788 + 13788 mRNA_5420 0.17 0.2
60,861 - 13788 mRNA_5420 0.20 1.0
60,882 - 13788 mRNA_5420 0.22 2.0
60,988 - 13788 mRNA_5420 0.27 3.0
61,048 - 13788 mRNA_5420 0.30 2.1
61,086 + 13788 mRNA_5420 0.32 1.9
61,169 - 13788 mRNA_5420 0.36 1.1
61,321 - 13788 mRNA_5420 0.44 0.5
61,470 - 13788 mRNA_5420 0.51 0.3
61,511 - 13788 mRNA_5420 0.53 -1.1
61,521 + 13788 mRNA_5420 0.54 -0.3
61,653 + 13788 mRNA_5420 0.61 0.2
61,706 + 13788 mRNA_5420 0.63 0.8
61,706 + 13788 mRNA_5420 0.63 0.8
61,738 + 13788 mRNA_5420 0.65 2.0
62,065 - 13788 mRNA_5420 0.82 -1.3
62,073 + 13788 mRNA_5420 0.82 -0.5
62,219 - 13788 mRNA_5420 0.89 1.0
62,219 - 13788 mRNA_5420 0.89 -0.1
62,220 + 13788 mRNA_5420 0.89 -0.8
62,377 - 1.1
62,610 - 0.7
62,613 + 0.1
62,710 - 2.0
62,743 - 2.1
62,750 - 0.3
62,752 + -0.9
62,753 - -0.4
62,759 - 2.4
62,765 - 0.5
62,769 + -0.3
62,773 - -1.0
62,774 + -0.1
62,780 + 0.9
62,882 + 2.5
63,037 - 0.4