Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5401

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5400: 13768 - K07786 emrY MFS transporter, DHA2 family, multidrug resistance protein, at 13151 to 15531 13768 mRNA_5401: 13769 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 15776 to 16734 13769 mRNA_5402: 13770 - KOG2938 Predicted inosine-uridine preferring nucleoside hydrolase, at 17110 to 18696 13770

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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14,790 + 13768 mRNA_5400 0.69 0.6
14,898 + 13768 mRNA_5400 0.73 1.2
15,102 - 13768 mRNA_5400 0.82 1.4
15,148 + 13768 mRNA_5400 0.84 0.8
15,278 + 13768 mRNA_5400 0.89 -0.8
15,309 + -0.2
15,403 + 0.1
15,419 + -1.0
15,456 + -0.3
15,589 + -0.3
15,592 - 1.1
15,594 - -0.8
15,598 + -0.9
15,598 + 1.3
15,604 - -0.5
15,608 + -0.3
15,611 + 2.0
15,613 - 0.7
15,616 + 0.5
15,617 - -0.3
15,622 + 0.2
15,630 + -0.1
15,642 - -0.2
15,647 - 1.0
15,676 - 2.0
15,680 + 0.2
15,714 + 2.2
15,789 + -1.2
15,834 + -0.1
16,094 + 13769 mRNA_5401 0.33 0.1
16,273 + 13769 mRNA_5401 0.52 -0.2
16,357 + 13769 mRNA_5401 0.61 -0.2
16,669 + 0.8
16,804 + -0.4
16,807 + -1.0
16,813 + 0.8
16,826 - 1.0
16,842 - 1.4
16,989 + 0.6
16,992 + 2.3
17,002 + 1.9
17,119 - 1.1
17,262 + -1.0
17,281 + 13770 mRNA_5402 0.11 1.1
17,325 + 13770 mRNA_5402 0.14 1.8
17,516 + 13770 mRNA_5402 0.26 0.5
17,557 + 13770 mRNA_5402 0.28 1.3
17,728 - 13770 mRNA_5402 0.39 1.3
17,728 - 13770 mRNA_5402 0.39 0.7