Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5395

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1148 to 1997 13763 mRNA_5396: 13764 - KOG4567 GTPase-activating protein, at 2092 to 5786 13764

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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158 - 2.2
159 - 0.1
160 - -0.3
169 - 1.0
180 - 1.3
189 + 0.4
198 + -1.3
201 - 1.4
208 - 0.4
210 + 0.2
225 + 13762 mRNA_5394 0.11 0.6
225 + 13762 mRNA_5394 0.11 1.4
244 + 13762 mRNA_5394 0.13 1.6
245 - 13762 mRNA_5394 0.13 -0.0
271 - 13762 mRNA_5394 0.16 -1.0
276 - 13762 mRNA_5394 0.16 0.9
277 + 13762 mRNA_5394 0.16 0.6
280 - 13762 mRNA_5394 0.17 0.3
306 + 13762 mRNA_5394 0.19 1.0
317 - 13762 mRNA_5394 0.21 0.5
345 + 13762 mRNA_5394 0.23 0.5
345 - 13762 mRNA_5394 0.23 -1.0
347 + 13762 mRNA_5394 0.24 1.7
359 - 13762 mRNA_5394 0.25 1.1
387 - 13762 mRNA_5394 0.28 -1.1
399 + 13762 mRNA_5394 0.29 1.9
434 + 13762 mRNA_5394 0.33 2.2
447 - 13762 mRNA_5394 0.34 1.0
485 - 13762 mRNA_5394 0.38 -0.8
543 + 13762 mRNA_5394 0.44 -0.2
649 + 13762 mRNA_5394 0.55 -0.6
667 + 13762 mRNA_5394 0.57 0.3
667 - 13762 mRNA_5394 0.57 1.0
678 - 13762 mRNA_5394 0.58 0.7
718 + 13762 mRNA_5394 0.63 -0.3
723 + 13762 mRNA_5394 0.63 -0.4
802 + 13762 mRNA_5394 0.71 0.9
806 + 13762 mRNA_5394 0.72 1.3
905 - 13762 mRNA_5394 0.82 0.1
911 + 13762 mRNA_5394 0.83 1.3
965 + 13762 mRNA_5394 0.88 0.8
966 + 13762 mRNA_5394 0.89 -0.4
968 + 13762 mRNA_5394 0.89 0.0
1,014 - 1.4
1,084 - 1.9
1,103 - 0.8
1,110 + 0.8
1,245 - 13763 mRNA_5395 0.11 1.3
1,260 - 13763 mRNA_5395 0.13 -1.2
1,376 - 13763 mRNA_5395 0.27 1.4
1,438 + 13763 mRNA_5395 0.34 1.3
1,438 + 13763 mRNA_5395 0.34 0.0
1,438 + 13763 mRNA_5395 0.34 -0.2
1,523 + 13763 mRNA_5395 0.44 -0.5
1,528 - 13763 mRNA_5395 0.45 -0.8
1,533 + 13763 mRNA_5395 0.45 0.1
1,538 + 13763 mRNA_5395 0.46 2.0
1,538 - 13763 mRNA_5395 0.46 0.2
1,556 + 13763 mRNA_5395 0.48 0.2
1,639 + 13763 mRNA_5395 0.58 0.2
1,854 - 13763 mRNA_5395 0.83 -0.1
1,855 - 13763 mRNA_5395 0.83 0.1
1,887 - 13763 mRNA_5395 0.87 0.6
1,908 - 13763 mRNA_5395 0.89 0.3
2,000 - -0.2
2,009 + 1.0
2,093 + -0.0
2,125 - 0.8
2,156 - 0.0
2,162 + 2.4
2,397 + 1.7
2,412 + 0.3
2,570 + 13764 mRNA_5396 0.13 -0.8
2,586 + 13764 mRNA_5396 0.13 -0.1
2,594 - 13764 mRNA_5396 0.14 1.7
2,597 + 13764 mRNA_5396 0.14 -0.6
2,661 + 13764 mRNA_5396 0.15 0.3
2,773 + 13764 mRNA_5396 0.18 -0.6
2,847 - 13764 mRNA_5396 0.20 1.6
2,895 - 13764 mRNA_5396 0.22 -0.2
2,923 + 13764 mRNA_5396 0.22 0.5