Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5337

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5336: 13704 - K14777 DDX47, RRP3 ATP-dependent RNA helicase DDX47/RRP3, at 482937 to 484688 13704 mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484904 to 487998 13705 mRNA_5338: 13706 - K00891 E2.7.1.71, aroK, aroL shikimate kinase, at 488482 to 491424 13706

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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484,905 - -0.4
485,157 - -0.5
485,197 + -0.2
485,329 + 13705 mRNA_5337 0.14 0.4
485,347 + 13705 mRNA_5337 0.14 0.0
485,389 - 13705 mRNA_5337 0.16 -0.8
485,565 - 13705 mRNA_5337 0.21 0.2
485,646 + 13705 mRNA_5337 0.24 -0.4
485,795 - 13705 mRNA_5337 0.29 -0.6
485,822 - 13705 mRNA_5337 0.30 -0.4
486,242 - 13705 mRNA_5337 0.43 -1.5
486,316 + 13705 mRNA_5337 0.46 0.0
486,376 - 13705 mRNA_5337 0.48 1.4
486,554 + 13705 mRNA_5337 0.53 0.7
486,554 + 13705 mRNA_5337 0.53 -0.2
486,616 - 13705 mRNA_5337 0.55 1.7
486,814 + 13705 mRNA_5337 0.62 -0.9
487,071 - 13705 mRNA_5337 0.70 0.7
487,231 + 13705 mRNA_5337 0.75 1.2
487,249 + 13705 mRNA_5337 0.76 -1.0
487,523 - 13705 mRNA_5337 0.85 1.1
488,100 - -0.3
488,146 + 0.9
488,373 - 1.4
488,393 + -0.2
488,408 + 1.9
488,410 - -1.3
488,520 - -1.1
488,545 - -1.1
488,803 + 13706 mRNA_5338 0.11 0.0
488,810 - 13706 mRNA_5338 0.11 0.7
488,810 - 13706 mRNA_5338 0.11 0.8
488,822 - 13706 mRNA_5338 0.12 0.4
488,956 - 13706 mRNA_5338 0.16 -1.7
488,991 - 13706 mRNA_5338 0.17 -0.8
488,996 + 13706 mRNA_5338 0.17 0.6