Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5319

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5318: 13686 - KOG4315 G-patch nucleic acid binding protein, at 444861 to 446150 13686 mRNA_5319: 13687 - HMMPfam-Plasma-membrane choline transporter-PF04515, at 446863 to 449105 13687 mRNA_5320: 13688 - K03038 PSMD7, RPN8 26S proteasome regulatory subunit N8, at 449451 to 450740 13688

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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446,205 - 1.5
446,212 + 0.3
446,322 + 0.8
446,542 - 1.7
446,667 - 1.7
446,709 + 0.3
446,825 - -0.3
446,981 - -0.5
447,130 - 13687 mRNA_5319 0.12 -1.0
447,396 - 13687 mRNA_5319 0.24 -2.3
447,986 - 13687 mRNA_5319 0.50 -1.2
447,993 + 13687 mRNA_5319 0.50 -1.3
448,144 + 13687 mRNA_5319 0.57 1.0
448,359 + 13687 mRNA_5319 0.67 0.3
448,550 + 13687 mRNA_5319 0.75 0.7
448,630 + 13687 mRNA_5319 0.79 0.1
448,736 + 13687 mRNA_5319 0.84 0.6
448,855 + 13687 mRNA_5319 0.89 2.6
448,882 + -1.5
448,891 - 1.6
448,912 + 0.1
449,162 - 1.5
449,172 - 0.6
449,176 - -1.0
449,177 + 0.4
449,177 - -0.5
449,198 + -0.3