Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5275

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5274: 13642 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 334553 to 337184 13642 mRNA_5275: 13643 - K06688 UBE2C, UBC11 ubiquitin-conjugating enzyme E2 C, at 337519 to 338338 13643 mRNA_5276: 13644 - Hypothetical Protein, at 339259 to 340241 13644

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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336,769 - 13642 mRNA_5274 0.84 0.4
336,917 - 13642 mRNA_5274 0.90 -0.7
337,037 + 1.1
337,091 - 1.2
337,101 + -0.3
337,249 + 0.9
337,249 - 0.5
337,252 + 0.1
337,362 + 2.1
337,362 + -0.2
337,365 - 0.2
337,371 - 1.5
337,385 + -0.2
337,496 + 0.0
337,532 + 0.1
337,871 + 13643 mRNA_5275 0.43 -0.6
337,979 - 13643 mRNA_5275 0.56 -0.4
338,097 - 13643 mRNA_5275 0.70 0.1
338,106 - 13643 mRNA_5275 0.72 -0.8
338,149 + 13643 mRNA_5275 0.77 -0.8
338,243 + 13643 mRNA_5275 0.88 0.2
338,260 + 0.8
338,265 - -0.1
338,294 - 0.1
338,391 + 2.8
338,417 + 0.0
338,552 - 0.5
338,649 + 1.9
338,693 + 1.3
338,709 + 0.3
338,733 - 2.2
338,792 + -0.8
338,795 + -0.8
338,849 + 0.1
338,853 - 0.9
338,946 - 1.8
338,987 - -2.3
338,994 + -0.1
338,998 - -0.1
339,006 + -0.3
339,276 - 1.1
339,293 - 0.7