Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5244

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5243: 13611 - KOG1601 GATA-4/5/6 transcription factors, at 247199 to 251043 13611 mRNA_5244: 13612 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 251965 to 253364 13612 mRNA_5245: 13613 - KOG2887 Membrane protein involved in ER to Golgi transport, at 253942 to 254889 13613

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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251,028 - -1.1
251,062 - 1.2
251,190 - 0.3
251,197 - 0.6
251,216 - -0.4
251,218 + -0.3
251,225 - 0.5
251,231 + 0.6
251,233 - 2.8
251,241 + -0.6
251,351 + 1.4
251,354 - 0.4
251,356 - -1.3
251,356 - -0.7
251,365 - 0.5
251,366 + 0.3
251,368 + -0.3
251,369 - 0.8
251,372 + 2.5
251,372 - 0.5
251,373 + 1.2
251,375 - -0.4
251,388 + 0.6
251,392 + -0.1
251,397 - 0.3
251,412 - 0.5
251,414 + -0.2
251,421 - -0.2
251,423 - 2.0
251,425 + -0.1
251,528 + -0.5
251,535 + 1.1
251,537 - -1.1
251,553 + -0.2
251,560 - 0.0
251,561 - -0.4
251,681 + 0.4
251,685 + -0.3
251,702 + 1.7
251,719 + -0.3
251,753 + -2.1
251,755 - 1.3
251,810 - 0.1
251,827 - -0.8
251,835 + 0.8
252,107 - 13612 mRNA_5244 0.10 0.2
252,377 - 13612 mRNA_5244 0.29 0.2
252,441 + 13612 mRNA_5244 0.34 0.0
253,002 + 13612 mRNA_5244 0.74 -0.6
253,161 - 13612 mRNA_5244 0.85 0.9
253,414 - 1.7
253,714 - -0.9
253,727 - 0.7
253,749 - 2.3
253,890 + -1.8
254,028 + 0.7