Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5233

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5232: 13600 - SUPERFAMILY--SSF52047, at 218691 to 220745 13600 mRNA_5233: 13601 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 221714 to 224141 13601 mRNA_5234: 13602 - KOG0725 Reductases with broad range of substrate specificities, at 224900 to 226337 13602

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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220,761 + 0.2
220,803 + 0.1
220,809 + -0.5
220,811 - 0.0
220,937 - -0.8
220,942 - 0.6
220,948 + -1.0
220,965 - 0.2
220,965 + -2.7
220,991 + 1.3
220,993 - 0.1
221,027 + 2.6
221,043 - -0.1
221,044 + 0.5
221,062 - 0.4
221,062 - -1.6
221,064 - 1.4
221,072 - -0.3
221,075 - -0.5
221,081 - 2.0
221,094 + -0.9
221,100 - 1.6
221,101 + 1.0
221,102 - 1.9
221,103 + 2.4
221,105 + -3.2
221,106 - -1.7
221,107 + -0.1
221,123 + 2.8
221,136 + 0.4
221,145 - 0.8
221,146 + 0.5
221,152 + -0.6
221,171 + -0.7
221,179 + 1.1
221,191 - -0.5
221,203 - 0.3
221,204 - -0.5
221,217 + -1.1
221,217 - -0.2
221,219 - 0.3
221,249 + 1.0
221,253 - -0.5
221,253 - -1.2
221,295 + 0.4
221,310 - 1.5
221,318 + 0.1
221,350 + 0.1
221,362 + -0.4
221,368 - 1.0
221,370 + 0.3
221,380 + 0.9
221,381 + 2.4
221,396 + 0.0
221,398 - 1.9
221,398 + -0.1
221,405 + -0.5
221,405 + -0.6
221,411 - 0.1
221,411 + -0.4
221,411 - 1.3
221,412 - 0.2
221,415 + 3.0
221,419 + 1.3
221,419 + -1.9
221,431 + 2.1
221,460 + 0.8
221,465 - -0.4
221,477 - 0.6
221,501 + -1.0
221,508 - 1.7
221,530 + -0.5
221,535 - 2.7
221,535 + 0.9
221,540 - 0.2
221,540 + -0.5
221,540 + 0.4
221,547 + 0.3
221,548 + 1.3
221,552 - -0.2
221,552 + 0.4
221,555 - 0.5
221,555 - 0.1
221,558 + 1.4
221,683 + -0.2
221,707 + -1.4
221,710 + -0.4
221,747 - 0.3
221,805 - -0.1
221,838 - -0.0
221,843 + -0.2
221,850 - 0.1
221,948 - 1.4
222,601 - 13601 mRNA_5233 0.37 1.2
222,723 - 13601 mRNA_5233 0.42 0.3
222,877 - 13601 mRNA_5233 0.48 -0.3
223,488 + 13601 mRNA_5233 0.73 -0.0
224,559 - 0.7
224,588 - 0.6
224,730 - 0.1
224,754 - 0.4
224,768 - 3.4
224,771 + 0.3
224,812 - 0.4
224,904 + 0.0
225,024 + -0.2
225,038 + -0.1
225,102 + 13602 mRNA_5234 0.14 0.1