Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5232

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5231: 13599 - Hypothetical Protein, at 216501 to 218178 13599 mRNA_5232: 13600 - SUPERFAMILY--SSF52047, at 218691 to 220745 13600 mRNA_5233: 13601 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 221714 to 224141 13601

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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217,716 - 13599 mRNA_5231 0.72 0.1
217,723 - 13599 mRNA_5231 0.73 -0.6
217,739 + 13599 mRNA_5231 0.74 1.5
217,845 - 13599 mRNA_5231 0.80 -0.2
217,861 - 13599 mRNA_5231 0.81 0.1
217,877 + 13599 mRNA_5231 0.82 0.4
217,896 - 13599 mRNA_5231 0.83 0.2
218,022 - -0.2
218,024 + 1.1
218,030 - 0.3
218,030 - -1.1
218,031 - 0.2
218,045 - 1.0
218,046 + -1.3
218,054 - -0.4
218,054 - 1.2
218,055 + 2.2
218,055 + 0.8
218,059 + 1.3
218,062 - -0.0
218,063 - 0.1
218,064 + 1.0
218,066 - -0.7
218,068 + -0.5
218,072 - 0.1
218,074 + 0.7
218,074 - 0.4
218,080 + 0.7
218,093 + -0.3
218,096 + 0.6
218,099 - 0.5
218,105 - -0.9
218,120 + 0.6
218,128 - -1.3
218,133 - -0.0
218,142 - 1.8
218,147 + -0.3
218,158 - 1.7
218,160 + -0.2
218,160 + 0.4
218,162 + 0.8
218,164 + -0.6
218,165 + -1.0
218,165 - 0.6
218,166 + 1.2
218,218 - 0.1
218,220 - -0.1
218,245 + 0.2
218,247 + -0.2
218,263 + -1.0
218,294 + 0.2
218,295 - 1.7
218,324 - 1.9
218,328 - -0.3
218,334 - -0.4
218,334 + 1.3
218,337 - -0.7
218,338 - 0.6
218,339 + 0.6
218,341 + 0.8
218,411 + -0.3
218,411 + 0.2
218,505 - 0.5
218,510 - -0.4
218,641 + 1.2
218,658 - 0.7
218,659 - 0.6
218,659 + -0.9
218,933 + 13600 mRNA_5232 0.12 -0.4
218,936 + 13600 mRNA_5232 0.12 1.1
218,937 - 13600 mRNA_5232 0.12 -0.5
219,076 + 13600 mRNA_5232 0.19 0.3
219,080 - 13600 mRNA_5232 0.19 1.4
219,227 - 13600 mRNA_5232 0.26 2.2
219,525 + 13600 mRNA_5232 0.41 1.7
219,667 - 13600 mRNA_5232 0.47 0.7
219,792 - 13600 mRNA_5232 0.54 -0.3
220,665 - 0.1
220,761 + 0.2
220,803 + 0.1
220,809 + -0.5
220,811 - 0.0
220,937 - -0.8
220,942 - 0.6
220,948 + -1.0
220,965 - 0.2
220,965 + -2.7
220,991 + 1.3
220,993 - 0.1
221,027 + 2.6
221,043 - -0.1
221,044 + 0.5
221,062 - 0.4
221,062 - -1.6
221,064 - 1.4
221,072 - -0.3
221,075 - -0.5
221,081 - 2.0
221,094 + -0.9
221,100 - 1.6
221,101 + 1.0
221,102 - 1.9
221,103 + 2.4
221,105 + -3.2
221,106 - -1.7
221,107 + -0.1
221,123 + 2.8
221,136 + 0.4
221,145 - 0.8
221,146 + 0.5
221,152 + -0.6
221,171 + -0.7
221,179 + 1.1
221,191 - -0.5
221,203 - 0.3
221,204 - -0.5
221,217 + -1.1
221,217 - -0.2
221,219 - 0.3
221,249 + 1.0
221,253 - -0.5
221,253 - -1.2
221,295 + 0.4
221,310 - 1.5
221,318 + 0.1
221,350 + 0.1
221,362 + -0.4
221,368 - 1.0
221,370 + 0.3
221,380 + 0.9
221,381 + 2.4
221,396 + 0.0
221,398 - 1.9
221,398 + -0.1
221,405 + -0.5
221,405 + -0.6
221,411 - 0.1
221,411 + -0.4
221,411 - 1.3
221,412 - 0.2
221,415 + 3.0
221,419 + 1.3
221,419 + -1.9
221,431 + 2.1
221,460 + 0.8
221,465 - -0.4
221,477 - 0.6
221,501 + -1.0
221,508 - 1.7
221,530 + -0.5
221,535 - 2.7
221,535 + 0.9
221,540 - 0.2
221,540 + -0.5
221,540 + 0.4
221,547 + 0.3
221,548 + 1.3
221,552 - -0.2
221,552 + 0.4
221,555 - 0.5
221,555 - 0.1
221,558 + 1.4
221,683 + -0.2
221,707 + -1.4
221,710 + -0.4