Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5225

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5224: 13592 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 190897 to 192363 13592 mRNA_5225: 13593 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 192628 to 196368 13593 mRNA_5226: 13594 - K12472 EPS15 epidermal growth factor receptor substrate 15, at 196713 to 201520 13594

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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191,639 - 13592 mRNA_5224 0.51 0.5
191,666 + 13592 mRNA_5224 0.52 0.3
191,695 + 13592 mRNA_5224 0.54 -0.9
191,823 + 13592 mRNA_5224 0.63 1.4
191,827 - 13592 mRNA_5224 0.63 -1.1
191,981 - 13592 mRNA_5224 0.74 -0.4
191,992 + 13592 mRNA_5224 0.75 3.4
192,170 + 13592 mRNA_5224 0.87 -1.5
192,188 + 13592 mRNA_5224 0.88 0.6
192,191 + 13592 mRNA_5224 0.88 0.3
192,194 + 13592 mRNA_5224 0.88 1.4
192,200 - 13592 mRNA_5224 0.89 -0.8
192,255 + 1.2
192,276 - 0.1
192,289 - 0.7
192,290 + -0.8
192,416 - -1.0
192,423 - -0.7
192,433 - 0.6
192,435 + -0.7
192,439 - 3.5
192,500 + 0.2
192,609 - -0.9
192,714 + -1.7
192,763 - 1.0
192,876 + 1.8
193,022 + 13593 mRNA_5225 0.11 0.5
193,032 - 13593 mRNA_5225 0.11 -1.4
193,053 + 13593 mRNA_5225 0.11 0.1
193,193 + 13593 mRNA_5225 0.15 -1.0
193,281 - 13593 mRNA_5225 0.17 1.6
193,295 - 13593 mRNA_5225 0.18 0.8
193,396 + 13593 mRNA_5225 0.21 1.8
193,648 + 13593 mRNA_5225 0.27 0.3
193,724 + 13593 mRNA_5225 0.29 -0.2
194,037 + 13593 mRNA_5225 0.38 3.0
194,083 + 13593 mRNA_5225 0.39 1.1
194,085 - 13593 mRNA_5225 0.39 2.4
194,231 - 13593 mRNA_5225 0.43 -0.9
194,266 + 13593 mRNA_5225 0.44 0.9
194,359 - 13593 mRNA_5225 0.46 -0.5
194,536 + 13593 mRNA_5225 0.51 -0.1
194,596 - 13593 mRNA_5225 0.53 -1.0
194,647 - 13593 mRNA_5225 0.54 1.1
194,652 + 13593 mRNA_5225 0.54 1.9
194,671 - 13593 mRNA_5225 0.55 -0.6
194,677 + 13593 mRNA_5225 0.55 1.7
194,760 + 13593 mRNA_5225 0.57 1.6
194,905 - 13593 mRNA_5225 0.61 0.7
194,915 + 13593 mRNA_5225 0.61 -0.6
195,068 + 13593 mRNA_5225 0.65 0.9
195,098 - 13593 mRNA_5225 0.66 0.3
195,228 + 13593 mRNA_5225 0.70 -0.9
195,323 - 13593 mRNA_5225 0.72 1.6
195,362 - 13593 mRNA_5225 0.73 -0.5
195,474 - 13593 mRNA_5225 0.76 1.5
195,477 + 13593 mRNA_5225 0.76 1.2
195,629 + 13593 mRNA_5225 0.80 2.9
195,639 + 13593 mRNA_5225 0.80 0.2
195,841 + 13593 mRNA_5225 0.86 0.1
195,844 - 13593 mRNA_5225 0.86 -0.6
195,871 + 13593 mRNA_5225 0.87 1.3
195,939 + 13593 mRNA_5225 0.89 0.5
196,229 - 1.1
196,229 - -0.2
196,568 - -1.2
196,726 - 1.3
196,737 + 0.5
196,746 + -0.5
196,860 + 0.0
196,993 - 0.5
197,000 + -0.6
197,011 - -0.1
197,013 - 1.0
197,143 - -1.4
197,281 + 13594 mRNA_5226 0.12 2.5