Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5218

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5216: 13584 - K04648 DCTN1 dynactin 1, at 169213 to 174465 13584 mRNA_5218: 13586 - HMMPfam-RNA12 protein-PF10443,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF54928, at 174597 to 177713 13586 mRNA_5219: 13587 - Hypothetical Protein, at 177901 to 180149 13587

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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174,502 + -0.1
174,503 - 1.2
174,517 + 1.0
174,560 - -0.2
174,565 + 1.4
174,566 + -0.1
174,577 + -1.5
174,601 - 0.3
174,700 + 0.7
174,734 - 1.3
175,148 - 13586 mRNA_5218 0.18 1.2
175,286 + 13586 mRNA_5218 0.22 0.8
175,593 - 13586 mRNA_5218 0.32 -0.8
175,593 + 13586 mRNA_5218 0.32 -0.4
176,005 - 13586 mRNA_5218 0.45 1.2
176,294 + 13586 mRNA_5218 0.54 0.6
176,410 - 13586 mRNA_5218 0.58 -0.2
176,507 + 13586 mRNA_5218 0.61 -0.1
176,754 - 13586 mRNA_5218 0.69 2.1
177,168 - 13586 mRNA_5218 0.82 1.2
177,366 + 13586 mRNA_5218 0.89 -1.0
177,462 + -0.3
177,502 + -0.6
177,521 + -0.2
177,563 - 0.8
177,578 + 0.3
177,603 + 0.3
177,609 - 0.7
177,615 - 2.1
177,728 + -0.2
177,737 - 0.9
177,747 + 1.1
177,750 - 0.9
177,760 + 0.2
177,766 - 0.3
177,775 - -0.3
177,785 - -0.9
177,818 - 1.6
177,840 + 0.4
177,860 + 0.1
177,864 - 1.3
177,978 - -0.7
177,986 + 1.2
178,001 + -0.3
178,071 - 2.1
178,112 - 1.0
178,124 - 2.8
178,132 + 13587 mRNA_5219 0.10 0.4
178,244 - 13587 mRNA_5219 0.15 -0.2
178,307 - 13587 mRNA_5219 0.18 0.3
178,408 + 13587 mRNA_5219 0.23 0.0
178,422 + 13587 mRNA_5219 0.23 1.0
178,439 - 13587 mRNA_5219 0.24 2.2
178,567 - 13587 mRNA_5219 0.30 -0.8