Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5195

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5194: 13562 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 122774 to 124635 13562 mRNA_5195: 13563 - KOG0814 Glyoxylase, at 125333 to 126456 13563 mRNA_5196: 13564 - K17218 sqr sulfide-quinone oxidoreductase, at 126891 to 128997 13564

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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124,511 - -0.9
124,556 - 0.6
124,583 - -0.7
124,586 - -1.6
124,591 - -0.4
124,616 + 0.3
124,624 - 0.9
124,645 + 0.3
124,732 - 0.5
124,773 + 0.8
124,775 + 1.0
124,775 + 0.8
124,776 - 0.4
124,781 + 0.3
124,784 - -0.7
124,788 + 1.5
124,798 + -0.2
124,798 + 1.2
124,801 - -1.2
124,803 + -0.0
124,805 - -0.7
124,807 + 1.5
124,812 + -0.2
124,896 + 0.9
124,927 + 1.9
124,941 - 1.8
124,961 - -2.2
124,963 + 1.8
124,968 - -0.4
124,968 + -1.4
124,968 + 0.5
124,970 - 0.0
124,972 + -0.3
124,975 + -1.3
124,983 + 0.2
124,984 + 0.4
125,005 - 0.3
125,016 + 2.0
125,040 - 2.3
125,043 - -0.3
125,050 + -0.4
125,223 + 1.2
125,227 + 1.3
125,665 + 13563 mRNA_5195 0.30 -1.2
125,668 + 13563 mRNA_5195 0.30 0.9
125,816 - 13563 mRNA_5195 0.43 0.1
125,816 + 13563 mRNA_5195 0.43 -0.0
125,957 - 13563 mRNA_5195 0.56 1.7
126,343 + 13563 mRNA_5195 0.90 0.1
126,364 + -0.4
126,411 - 0.7
126,498 - 0.9
126,511 + 0.3
126,518 - 1.2
126,524 - 2.3
126,532 + 0.7
126,540 + 0.5
126,540 + -0.8
126,668 + 0.3
126,684 - -0.2
126,695 + 2.0
126,697 + -1.4
126,704 + 0.5
126,711 - 1.1
126,810 - -0.5
126,816 - 1.2
126,817 + 0.3
126,839 + -1.1
126,924 + -0.6
127,006 + 1.0
127,171 + 13564 mRNA_5196 0.13 -0.5
127,303 + 13564 mRNA_5196 0.20 0.9
127,305 - 13564 mRNA_5196 0.20 -0.8
127,430 + 13564 mRNA_5196 0.26 1.7
127,443 + 13564 mRNA_5196 0.26 -0.6
127,443 - 13564 mRNA_5196 0.26 0.1