Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5025

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5024: 13392 - K11124 SMG6, EST1A protein SMG6, at 1575656 to 1580280 13392 mRNA_5025: 13393 - BLAST HECT-type ubiquitin ligase-interacting protein creD [..., at 1580714 to 1583108 13393 mRNA_5026: 13394 - K01698 hemB, ALAD porphobilinogen synthase, at 1583295 to 1584679 13394

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,579,740 - 13392 mRNA_5024 0.88 1.9
1,579,947 - -0.6
1,580,265 + 0.1
1,580,551 - -0.2
1,580,827 + -1.0
1,580,855 - 0.2
1,581,283 + 13393 mRNA_5025 0.24 -0.4
1,581,428 - 13393 mRNA_5025 0.30 -0.0
1,581,568 + 13393 mRNA_5025 0.36 0.7
1,582,063 + 13393 mRNA_5025 0.56 0.6
1,582,151 - 13393 mRNA_5025 0.60 0.8
1,582,289 - 13393 mRNA_5025 0.66 0.2
1,582,557 - 13393 mRNA_5025 0.77 -0.5
1,582,745 - 13393 mRNA_5025 0.85 -0.8
1,582,870 - -0.6
1,582,874 - -0.0
1,582,890 + -0.5
1,583,031 - 0.0
1,583,032 + -0.1
1,583,172 - -0.5
1,583,175 + 0.2
1,583,178 + -0.1