Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5006

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5005: 13373 - K10956 SEC61A protein transport protein SEC61 subunit alpha, at 1522802 to 1524731 13373 mRNA_5006: 13374 - K20299 VPS53 vacuolar protein sorting-associated protein 53, at 1525001 to 1528336 13374 mRNA_5007: 13375 - Hypothetical Protein, at 1528633 to 1529200 13375

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,524,802 - 1.3
1,524,813 + 0.1
1,524,945 - 0.6
1,525,098 - 0.5
1,525,109 + 0.9
1,525,125 + 0.9
1,525,264 - 0.1
1,525,462 - 13374 mRNA_5006 0.14 1.6
1,525,812 + 13374 mRNA_5006 0.24 0.1
1,525,859 + 13374 mRNA_5006 0.26 -0.1
1,525,869 - 13374 mRNA_5006 0.26 0.6
1,526,438 + 13374 mRNA_5006 0.43 1.1
1,526,469 - 13374 mRNA_5006 0.44 0.0
1,526,476 + 13374 mRNA_5006 0.44 0.4
1,526,581 + 13374 mRNA_5006 0.47 1.1
1,526,915 + 13374 mRNA_5006 0.57 1.0
1,527,056 + 13374 mRNA_5006 0.62 -1.5
1,527,351 - 13374 mRNA_5006 0.70 0.1
1,527,550 - 13374 mRNA_5006 0.76 0.2
1,527,654 + 13374 mRNA_5006 0.80 -1.7
1,527,951 - 13374 mRNA_5006 0.88 -0.8
1,528,028 - 0.2
1,528,081 - -0.6
1,528,219 + 0.8
1,528,244 + 1.0
1,528,387 - 1.2
1,528,390 + 0.3
1,528,392 - 0.5
1,528,395 + 0.3
1,528,395 + 0.2
1,528,397 - 0.7
1,528,407 - -0.3
1,528,412 + 0.6
1,528,417 - -0.0
1,528,444 - -0.6
1,528,540 - -0.2
1,528,554 + 0.3
1,528,565 + 0.0
1,528,568 - 0.4
1,528,614 - -0.8
1,528,622 + 0.2
1,528,727 - 13375 mRNA_5007 0.17 1.8
1,528,740 + 13375 mRNA_5007 0.19 -0.1
1,528,743 + 13375 mRNA_5007 0.19 -1.1
1,528,743 - 13375 mRNA_5007 0.19 0.5
1,528,745 - 13375 mRNA_5007 0.20 0.7
1,528,747 + 13375 mRNA_5007 0.20 -0.1
1,528,879 - 13375 mRNA_5007 0.43 1.8
1,529,016 - 13375 mRNA_5007 0.67 -0.4
1,529,038 - 13375 mRNA_5007 0.71 -0.7
1,529,040 - 13375 mRNA_5007 0.72 0.3
1,529,041 + 13375 mRNA_5007 0.72 -1.7