Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4989

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4988: 13356 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 1484024 to 1484924 13356 mRNA_4989: 13357 - Hypothetical Protein, at 1485685 to 1486453 13357 mRNA_4990: 13358 - K00354 E1.6.99.1 NADPH2 dehydrogenase, at 1486606 to 1488181 13358

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,484,745 - 13356 mRNA_4988 0.80 1.8
1,484,759 + 13356 mRNA_4988 0.82 0.9
1,484,818 - 13356 mRNA_4988 0.88 0.9
1,484,892 - 0.7
1,484,898 - -0.7
1,484,900 + -0.5
1,484,939 + 1.2
1,485,006 - 0.0
1,485,046 - 0.1
1,485,055 + -1.1
1,485,055 + 0.8
1,485,057 - -0.6
1,485,058 + 2.7
1,485,063 - -0.3
1,485,068 + -0.6
1,485,071 - 0.6
1,485,078 + 1.1
1,485,120 + -0.3
1,485,120 + -1.7
1,485,132 - -0.5
1,485,133 + 0.1
1,485,157 - -1.5
1,485,345 - -0.1
1,485,376 - -1.0
1,485,391 + 1.5
1,485,509 - 0.4
1,485,533 + -0.4
1,485,539 + -1.0
1,485,635 + 1.0
1,485,799 - 13357 mRNA_4989 0.15 -0.2
1,485,812 - 13357 mRNA_4989 0.17 0.7
1,485,815 - 13357 mRNA_4989 0.17 -1.4
1,485,828 - 13357 mRNA_4989 0.19 -1.8
1,485,953 + 13357 mRNA_4989 0.35 0.1
1,485,974 - 13357 mRNA_4989 0.38 0.7
1,485,979 - 13357 mRNA_4989 0.38 1.8
1,486,114 + 13357 mRNA_4989 0.56 -0.5
1,486,983 + 13358 mRNA_4990 0.24 1.0
1,487,081 + 13358 mRNA_4990 0.30 -0.2
1,487,105 + 13358 mRNA_4990 0.32 0.0
1,487,137 + 13358 mRNA_4990 0.34 -0.9
1,487,267 + 13358 mRNA_4990 0.42 0.9
1,487,270 - 13358 mRNA_4990 0.42 0.5
1,487,286 + 13358 mRNA_4990 0.43 1.2