Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4988

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4987: 13355 - Hypothetical Protein, at 1482812 to 1483516 13355 mRNA_4988: 13356 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 1484024 to 1484924 13356 mRNA_4989: 13357 - Hypothetical Protein, at 1485685 to 1486453 13357

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,483,114 + 13355 mRNA_4987 0.43 -0.3
1,483,116 - 13355 mRNA_4987 0.43 -1.0
1,483,117 + 13355 mRNA_4987 0.43 -0.2
1,483,122 - 13355 mRNA_4987 0.44 -0.2
1,483,127 + 13355 mRNA_4987 0.45 -0.3
1,483,131 + 13355 mRNA_4987 0.45 -1.3
1,483,132 + 13355 mRNA_4987 0.45 -1.3
1,483,142 + 13355 mRNA_4987 0.47 0.4
1,483,146 + 13355 mRNA_4987 0.47 -0.2
1,483,155 - 13355 mRNA_4987 0.49 0.0
1,483,162 - 13355 mRNA_4987 0.50 0.3
1,483,194 - 13355 mRNA_4987 0.54 0.3
1,483,197 - 13355 mRNA_4987 0.55 1.0
1,483,259 + 13355 mRNA_4987 0.63 2.6
1,483,319 + 13355 mRNA_4987 0.72 -0.9
1,483,320 + 13355 mRNA_4987 0.72 1.9
1,483,335 + 13355 mRNA_4987 0.74 0.2
1,483,346 + 13355 mRNA_4987 0.76 0.3
1,483,377 + 13355 mRNA_4987 0.80 -1.0
1,483,381 - 13355 mRNA_4987 0.81 -1.3
1,483,403 + 13355 mRNA_4987 0.84 0.4
1,483,410 - 13355 mRNA_4987 0.85 1.2
1,483,417 + 13355 mRNA_4987 0.86 1.1
1,483,423 - 13355 mRNA_4987 0.87 0.4
1,483,477 + 0.5
1,483,505 - -0.5
1,483,507 - -1.9
1,483,507 - -0.4
1,483,516 - -0.2
1,483,520 + -0.2
1,483,529 - -0.0
1,483,533 + -0.5
1,483,538 - 0.8
1,483,548 - 0.8
1,483,556 + -0.3
1,483,563 - -0.6
1,483,570 + 0.3
1,483,571 - 2.1
1,483,572 + 1.5
1,483,629 - 1.0
1,483,646 - 0.2
1,483,686 - -0.6
1,483,699 - -0.1
1,483,710 - -2.2
1,483,720 - 0.2
1,483,721 + 0.7
1,483,726 - -0.3
1,483,733 + 0.7
1,483,746 + 0.5
1,483,750 - 0.7
1,483,757 - 0.3
1,483,761 - 0.9
1,483,763 - -0.3
1,483,775 - -1.0
1,483,775 - 2.0
1,483,783 - -0.4
1,483,804 - -0.0
1,483,810 + -0.1
1,483,821 - 0.8
1,483,834 - 0.4
1,483,839 - 1.9
1,483,840 + 1.3
1,483,843 + -0.3
1,483,852 - 1.1
1,483,858 + 1.4
1,483,864 - 1.6
1,483,877 - 1.3
1,483,897 + 1.0
1,484,155 - 13356 mRNA_4988 0.15 -0.3
1,484,318 - 13356 mRNA_4988 0.33 -0.2
1,484,330 + 13356 mRNA_4988 0.34 -0.0
1,484,333 + 13356 mRNA_4988 0.34 -0.9
1,484,745 - 13356 mRNA_4988 0.80 1.8
1,484,759 + 13356 mRNA_4988 0.82 0.9
1,484,818 - 13356 mRNA_4988 0.88 0.9
1,484,892 - 0.7
1,484,898 - -0.7
1,484,900 + -0.5
1,484,939 + 1.2
1,485,006 - 0.0
1,485,046 - 0.1
1,485,055 + -1.1
1,485,055 + 0.8
1,485,057 - -0.6
1,485,058 + 2.7
1,485,063 - -0.3
1,485,068 + -0.6
1,485,071 - 0.6
1,485,078 + 1.1
1,485,120 + -0.3
1,485,120 + -1.7
1,485,132 - -0.5
1,485,133 + 0.1
1,485,157 - -1.5
1,485,345 - -0.1
1,485,376 - -1.0
1,485,391 + 1.5
1,485,509 - 0.4
1,485,533 + -0.4
1,485,539 + -1.0
1,485,635 + 1.0
1,485,799 - 13357 mRNA_4989 0.15 -0.2
1,485,812 - 13357 mRNA_4989 0.17 0.7
1,485,815 - 13357 mRNA_4989 0.17 -1.4
1,485,828 - 13357 mRNA_4989 0.19 -1.8