Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4770

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4769: 13137 - K01866 YARS, tyrS tyrosyl-tRNA synthetase, at 969625 to 971504 13137 mRNA_4770: 13138 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 971879 to 977050 13138 mRNA_4771: 13139 - K20062 ART4_5_7 arrestin-related trafficking adapter 4/5/7, at 977972 to 980923 13139

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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971,678 + 0.1
971,843 - 2.3
971,857 + -0.6
971,991 - 0.3
972,007 + 0.3
972,262 - 2.3
972,538 - 13138 mRNA_4770 0.13 0.1
972,554 - 13138 mRNA_4770 0.13 0.4
972,587 + 13138 mRNA_4770 0.14 0.6
972,706 - 13138 mRNA_4770 0.16 0.2
972,725 - 13138 mRNA_4770 0.16 0.5
972,746 - 13138 mRNA_4770 0.17 -0.6
972,749 + 13138 mRNA_4770 0.17 -0.3
972,977 - 13138 mRNA_4770 0.21 -0.9
973,000 - 13138 mRNA_4770 0.22 1.7
973,147 + 13138 mRNA_4770 0.25 0.3
973,168 - 13138 mRNA_4770 0.25 -0.1
973,500 - 13138 mRNA_4770 0.31 0.2
973,691 - 13138 mRNA_4770 0.35 -0.3
973,805 - 13138 mRNA_4770 0.37 1.1
974,125 + 13138 mRNA_4770 0.43 -1.6
974,395 + 13138 mRNA_4770 0.49 -0.4
975,115 - 13138 mRNA_4770 0.63 0.5
975,124 - 13138 mRNA_4770 0.63 -0.7
975,130 + 13138 mRNA_4770 0.63 0.1
975,275 - 13138 mRNA_4770 0.66 1.8
975,296 - 13138 mRNA_4770 0.66 1.7
975,390 - 13138 mRNA_4770 0.68 -0.4
975,443 - 13138 mRNA_4770 0.69 0.4
975,466 - 13138 mRNA_4770 0.69 -0.7
975,572 + 13138 mRNA_4770 0.71 0.3
975,594 + 13138 mRNA_4770 0.72 2.2
975,708 - 13138 mRNA_4770 0.74 -0.3
975,862 - 13138 mRNA_4770 0.77 1.1
976,044 + 13138 mRNA_4770 0.81 0.3
976,121 + 13138 mRNA_4770 0.82 1.0
976,314 + 13138 mRNA_4770 0.86 1.1
976,449 + 13138 mRNA_4770 0.88 1.2
976,472 - 13138 mRNA_4770 0.89 -0.4
976,476 - 13138 mRNA_4770 0.89 0.3
976,508 + 13138 mRNA_4770 0.90 0.8
976,634 - -0.8
976,794 + -0.6
976,795 + 0.1
976,902 + 0.7
976,924 + -1.6
977,100 + 0.1
977,145 - -0.7
977,209 - 0.5
977,220 - 0.7
977,225 - 0.7
977,228 + 0.1
977,271 + 0.4
977,311 + 1.5
977,353 + 0.2
977,360 - 2.2
977,361 - 3.9
977,362 - 1.8
977,365 - 0.3
977,374 - 1.0
977,376 + 1.0
977,393 + 1.0
977,513 - 2.4
977,525 - -0.5
977,531 - 0.9
977,624 - 0.8
977,663 + 0.5