Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4753

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4752: 13120 - KOG1263 Multicopper oxidases, at 922993 to 927297 13120 mRNA_4753: 13121 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 927583 to 931061 13121 mRNA_4754: 13122 - ProSiteProfiles-F-box domain profile.-PS50181, at 931606 to 933249 13122

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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926,672 - 13120 mRNA_4752 0.85 0.8
926,822 + 13120 mRNA_4752 0.89 -0.8
926,841 + 13120 mRNA_4752 0.89 0.2
926,930 - 0.7
926,936 - 0.1
927,146 + 0.2
927,225 - -0.2
927,384 - -0.1
927,687 + 0.2
928,093 + 13121 mRNA_4753 0.15 1.3
928,145 - 13121 mRNA_4753 0.16 -0.9
928,208 - 13121 mRNA_4753 0.18 1.0
928,215 + 13121 mRNA_4753 0.18 0.9
928,365 - 13121 mRNA_4753 0.22 -0.2
928,367 + 13121 mRNA_4753 0.23 0.3
928,725 + 13121 mRNA_4753 0.33 -0.1
928,810 - 13121 mRNA_4753 0.35 -0.1
928,834 - 13121 mRNA_4753 0.36 1.0
928,937 - 13121 mRNA_4753 0.39 0.8
928,963 - 13121 mRNA_4753 0.40 0.6
929,143 + 13121 mRNA_4753 0.45 0.9
929,262 - 13121 mRNA_4753 0.48 1.1
929,577 - 13121 mRNA_4753 0.57 0.6
929,821 - 13121 mRNA_4753 0.64 0.1
929,827 + 13121 mRNA_4753 0.65 1.2
929,830 - 13121 mRNA_4753 0.65 -0.5
929,841 + 13121 mRNA_4753 0.65 -0.3
929,850 - 13121 mRNA_4753 0.65 2.5
929,884 + 13121 mRNA_4753 0.66 -0.8
930,106 - 13121 mRNA_4753 0.73 -2.0
930,118 - 13121 mRNA_4753 0.73 0.9
930,118 + 13121 mRNA_4753 0.73 0.6
930,303 + 13121 mRNA_4753 0.78 -0.4
930,308 - 13121 mRNA_4753 0.78 -0.1
930,429 - 13121 mRNA_4753 0.82 0.2
930,441 - 13121 mRNA_4753 0.82 -2.1
930,493 - 13121 mRNA_4753 0.84 2.2
930,568 - 13121 mRNA_4753 0.86 1.0
930,593 + 13121 mRNA_4753 0.87 -0.3
930,908 + 1.4
931,011 - -0.5
931,024 + -1.3
931,031 - -0.3
931,036 - 0.8
931,051 + 0.7
931,202 + 0.2
931,204 - -0.5
931,211 + 2.5
931,214 - 0.1
931,336 + -0.1
931,336 + 0.5
931,342 - 3.0
931,343 - 0.9
931,347 + 0.3
931,357 - 0.6
931,359 - -0.6
931,360 - 2.7
931,360 + 0.3
931,361 - 0.1
931,367 - 0.0
931,376 + 0.4
931,376 + 1.0
931,379 + -1.0
931,386 - -0.4
931,413 + 2.0
931,508 - -0.2
931,524 + -0.0
931,540 - 0.9
931,680 - -0.6
931,801 - 13122 mRNA_4754 0.12 1.9
931,806 - 13122 mRNA_4754 0.12 0.0
931,813 + 13122 mRNA_4754 0.13 0.4
931,881 - 13122 mRNA_4754 0.17 1.4
931,955 - 13122 mRNA_4754 0.21 -0.2
931,989 + 13122 mRNA_4754 0.23 -0.5
931,990 - 13122 mRNA_4754 0.23 0.1
932,016 + 13122 mRNA_4754 0.25 3.5