Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4627

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4626: 12994 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 630956 to 632424 12994 mRNA_4627: 12995 - K16196 EIF2AK4 eukaryotic translation initiation factor 2-alpha kinase 4, at 632706 to 638769 12995 mRNA_4628: 12996 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 639260 to 641629 12996

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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631,992 + 12994 mRNA_4626 0.71 -0.0
632,513 + -0.4
632,684 - 3.0
632,836 - 0.5
632,996 + 1.7
633,680 + 12995 mRNA_4627 0.16 1.2
633,681 + 12995 mRNA_4627 0.16 1.5
633,685 - 12995 mRNA_4627 0.16 0.5
634,011 + 12995 mRNA_4627 0.22 -0.0
634,131 + 12995 mRNA_4627 0.23 3.0
634,247 - 12995 mRNA_4627 0.25 1.2
634,574 - 12995 mRNA_4627 0.31 3.0
634,710 - 12995 mRNA_4627 0.33 3.6
635,189 + 12995 mRNA_4627 0.41 1.4
635,448 + 12995 mRNA_4627 0.45 1.2
635,593 - 12995 mRNA_4627 0.48 1.0
636,689 + 12995 mRNA_4627 0.66 1.1
636,715 - 12995 mRNA_4627 0.66 1.6
636,934 - 12995 mRNA_4627 0.70 0.7
637,225 + 12995 mRNA_4627 0.75 0.5
637,243 - 12995 mRNA_4627 0.75 2.8
637,266 - 12995 mRNA_4627 0.75 0.1
637,681 + 12995 mRNA_4627 0.82 0.0
637,888 + 12995 mRNA_4627 0.85 0.7
637,955 - 12995 mRNA_4627 0.87 1.7
638,002 + 12995 mRNA_4627 0.87 -0.4
638,056 - 12995 mRNA_4627 0.88 1.1
638,124 + 12995 mRNA_4627 0.89 0.6
638,545 - 0.7
638,789 + -0.2
638,800 - -0.1
638,817 - 0.4
638,826 - 0.8
638,952 - 0.1
638,958 + -2.1
639,112 + 0.5
639,403 - -0.6
639,424 - 0.1
639,426 + -1.1
639,427 + 2.4
639,540 - 12996 mRNA_4628 0.12 0.5