Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4575

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4574: 12942 - K12184 VPS28 ESCRT-I complex subunit VPS28, at 499044 to 500144 12942 mRNA_4575: 12943 - HMMPfam-ICE2-PF08426, at 500416 to 502164 12943 mRNA_4576: 12944 - K00787 FDPS farnesyl diphosphate synthase, at 502452 to 503977 12944

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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499,794 - 12942 mRNA_4574 0.68 -1.0
499,815 - 12942 mRNA_4574 0.70 1.2
500,103 - -0.2
500,248 - -0.6
500,397 - 1.6
500,400 + -0.4
500,402 + 0.2
500,455 + 3.0
500,541 + 1.9
500,695 - 12943 mRNA_4575 0.16 0.1
500,866 + 12943 mRNA_4575 0.26 -0.1
501,991 - 0.4
502,143 + -0.6
502,149 + -1.5
502,288 - 0.5
502,297 - -0.4
502,310 + -0.1