Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4566

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4565: 12933 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 477682 to 479259 12933 mRNA_4566: 12934 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 479407 to 483783 12934 mRNA_4567: 12935 - K10743 RNASEH2A ribonuclease H2 subunit A, at 484052 to 485585 12935

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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478,480 - 12933 mRNA_4565 0.51 -1.5
478,528 - 12933 mRNA_4565 0.54 0.2
478,650 + 12933 mRNA_4565 0.61 -1.7
478,783 + 12933 mRNA_4565 0.70 -1.9
479,111 - 0.6
479,251 - -1.1
479,394 - 0.6
479,984 - 12934 mRNA_4566 0.13 1.6
480,323 + 12934 mRNA_4566 0.21 -0.1
480,364 - 12934 mRNA_4566 0.22 1.6
481,063 + 12934 mRNA_4566 0.38 0.5
481,899 + 12934 mRNA_4566 0.57 -0.1
482,215 - 12934 mRNA_4566 0.64 -0.0
482,409 - 12934 mRNA_4566 0.69 -0.2
482,419 + 12934 mRNA_4566 0.69 0.5
482,521 - 12934 mRNA_4566 0.71 -0.4
483,245 + 12934 mRNA_4566 0.88 0.1
483,686 + -0.1
483,830 + 0.8
483,830 - -0.1
483,848 - -1.7
483,922 - 1.8
483,938 - 1.6
483,988 - -0.0
484,000 - -0.7
484,002 + -0.2
484,018 + 0.5
484,697 + 12935 mRNA_4567 0.42 0.2