Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4564

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4563: 12931 - KOG1601 GATA-4/5/6 transcription factors, at 469300 to 472637 12931 mRNA_4564: 12932 - K11844 USP16_45 ubiquitin carboxyl-terminal hydrolase 16/45, at 473313 to 477203 12932 mRNA_4565: 12933 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 477682 to 479259 12933

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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472,447 + 1.3
472,696 - 1.6
472,715 + 0.5
472,734 + -0.0
473,019 + -0.2
473,020 - 0.6
473,027 - -0.8
473,035 - -0.0
473,048 + 0.6
473,057 - -1.4
473,149 + -0.1
473,157 + -0.3
473,172 + 1.6
473,174 + -0.3
473,175 - -0.5
473,176 + 0.4
473,176 - 1.2
473,180 - -0.6
473,181 + 1.4
473,187 + -0.5
473,192 - 1.0
473,193 + 1.6
473,196 + 1.3
473,199 + -0.6
473,213 - 0.9
473,241 + 2.6
473,243 - -0.2
473,317 - 0.9
473,346 + -0.4
473,363 - 0.4
473,366 + 0.4
473,376 + -0.8
473,521 + -2.2
473,666 + -2.8
473,820 - 12932 mRNA_4564 0.13 -0.8
473,949 + 12932 mRNA_4564 0.16 -0.2
473,987 + 12932 mRNA_4564 0.17 -2.7
474,006 + 12932 mRNA_4564 0.18 1.6
474,549 + 12932 mRNA_4564 0.32 -1.6
474,585 - 12932 mRNA_4564 0.33 -2.6
474,657 - 12932 mRNA_4564 0.35 -0.2
475,011 - 12932 mRNA_4564 0.44 -2.5
475,081 - 12932 mRNA_4564 0.45 -2.3
475,141 + 12932 mRNA_4564 0.47 -0.9
475,285 - 12932 mRNA_4564 0.51 -1.6
475,852 + 12932 mRNA_4564 0.65 -0.6
476,278 - 12932 mRNA_4564 0.76 1.4
476,361 + 12932 mRNA_4564 0.78 -1.3
476,387 - 12932 mRNA_4564 0.79 1.6
476,418 + 12932 mRNA_4564 0.80 -0.0
476,867 - -1.0
477,024 - -1.4
477,027 + -0.8
477,031 - -2.5
477,160 - -1.1
477,191 + -1.9
477,203 - -0.9
477,203 - -0.7
477,294 - -3.1
477,335 - -0.9
477,344 + -1.8
477,348 + -0.6
477,448 + 0.9
477,461 - 1.7
477,466 - 1.3
477,482 - 1.5
477,483 - 0.6
477,615 - -0.6
477,621 - -1.5
477,639 + -0.6
477,658 - -0.4
477,788 + -0.5
477,933 - 12933 mRNA_4565 0.16 -0.3
477,965 - 12933 mRNA_4565 0.18 0.5
478,087 + 12933 mRNA_4565 0.26 0.1
478,202 - 12933 mRNA_4565 0.33 -0.4