Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4510

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4509: 12877 - HMMPfam-Ctr copper transporter family-PF04145, at 345259 to 347501 12877 mRNA_4510: 12878 - KOG0627 Heat shock transcription factor, at 348191 to 349956 12878

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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347,377 - 1.6
347,686 - 2.8
347,813 - 1.2
347,976 - 0.4
348,130 - -0.7
348,312 - 0.5
348,418 + 12878 mRNA_4510 0.13 1.2
348,789 + 12878 mRNA_4510 0.34 -0.9
348,978 - 12878 mRNA_4510 0.45 0.5
349,135 + 12878 mRNA_4510 0.53 1.3
349,271 - 12878 mRNA_4510 0.61 0.6
349,413 + 12878 mRNA_4510 0.69 1.2
349,691 - 12878 mRNA_4510 0.85 0.1
349,864 + 0.9
349,957 + -1.5
349,980 - 2.4
349,990 + 0.6
349,995 - 1.4
350,011 + 0.5
350,031 - 0.2
350,077 - -0.8
350,133 + 1.1
350,143 - -1.7
350,159 + -0.8
350,177 + 1.4
350,178 - 1.1
350,183 + 0.6
350,191 + 0.7
350,211 + 0.9
350,329 - -1.2
350,449 + 1.3
350,457 + 0.8
350,479 - -0.1
350,484 + -0.4
350,586 - -1.2
350,603 + 0.6
350,650 - -0.5
350,797 + -0.4
350,800 - 1.8
350,803 + 1.9
350,817 + 0.7
350,817 + -1.2
350,921 - -2.8
350,941 - 0.5
350,947 + 1.3
350,948 - -0.5