Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4452

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4451: 12819 - K03355 APC8, CDC23 anaphase-promoting complex subunit 8, at 214508 to 216794 12819 mRNA_4452: 12820 - K13955 yogA zinc-binding alcohol dehydrogenase/oxidoreductase, at 217165 to 218716 12820 mRNA_4453: 12821 - KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis, at 218886 to 222303 12821

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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216,862 - 0.5
216,889 + 0.1
216,986 + 1.8
216,997 - 1.4
217,001 - 0.4
217,018 + 1.1
217,026 - -0.8
217,032 + 0.3
217,036 - 0.2
217,192 - 0.1
217,214 + -1.2
217,303 + 0.9
217,331 - 12820 mRNA_4452 0.11 2.1
217,812 + 12820 mRNA_4452 0.42 -1.6
218,406 + 12820 mRNA_4452 0.80 0.1
218,420 - 12820 mRNA_4452 0.81 0.3
218,434 - 12820 mRNA_4452 0.82 0.4
218,507 + 12820 mRNA_4452 0.86 -0.9
218,759 + 2.5
218,760 - 1.2
218,846 - -0.2
218,904 + -0.0
218,991 + -0.8
219,051 - 0.9
219,197 + 0.5
219,258 - 12821 mRNA_4453 0.11 -1.3
219,332 + 12821 mRNA_4453 0.13 -1.1
219,494 + 12821 mRNA_4453 0.18 0.2
219,497 - 12821 mRNA_4453 0.18 0.8
219,630 - 12821 mRNA_4453 0.22 0.0
219,646 - 12821 mRNA_4453 0.22 -1.1