Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4405

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4404: 12772 - HMMPfam-Fatty acid hydroxylase superfamily-PF04116, at 103053 to 104397 12772 mRNA_4405: 12773 - K05925 METTL3_14 mRNA (2'-O-methyladenosine-N6-)-methyltransferase, at 105098 to 106781 12773 mRNA_4406: 12774 - KOG2100 Dipeptidyl aminopeptidase, at 106855 to 109155 12774

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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104,186 - 12772 mRNA_4404 0.84 1.0
104,467 + -0.8
104,484 - 1.1
104,505 - -0.5
104,524 + -0.7
104,529 - -0.1
104,536 - -0.1
104,639 - 0.0
104,641 - 1.8
104,641 - -0.0
104,661 - -0.3
104,662 - 0.2
104,756 - 0.3
104,937 - -0.2
104,978 + 0.4
105,098 - -0.9
105,112 + -0.1
105,295 + 12773 mRNA_4405 0.12 1.1
105,395 - 12773 mRNA_4405 0.18 0.8
105,528 + 12773 mRNA_4405 0.26 0.9
105,533 - 12773 mRNA_4405 0.26 1.7
105,559 + 12773 mRNA_4405 0.27 0.4
106,274 - 12773 mRNA_4405 0.70 0.2
106,391 + 12773 mRNA_4405 0.77 -0.9
106,440 + 12773 mRNA_4405 0.80 1.1
106,606 + 12773 mRNA_4405 0.90 0.7
106,843 - 0.3
107,151 + 12774 mRNA_4406 0.13 -0.5
107,279 - 12774 mRNA_4406 0.18 -0.2
107,298 - 12774 mRNA_4406 0.19 1.0
107,298 + 12774 mRNA_4406 0.19 0.9
107,422 + 12774 mRNA_4406 0.25 -0.1
107,487 - 12774 mRNA_4406 0.27 -1.2
107,531 + 12774 mRNA_4406 0.29 0.2
107,762 - 12774 mRNA_4406 0.39 0.5