Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4317

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4316: 12684 - K03178 UBE1, UBA1 ubiquitin-activating enzyme E1, at 1886479 to 1890750 12684 mRNA_4317: 12685 - K07025 K07025 putative hydrolase of the HAD superfamily, at 1891657 to 1892743 12685 mRNA_4318: 12686 - HMMPfam-SnoaL-like domain-PF13577,SUPERFAMILY--SSF54427, at 1892853 to 1893990 12686

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,890,779 - 0.4
1,890,880 - -0.8
1,890,905 - 0.5
1,890,954 - 0.6
1,891,101 + 0.1
1,891,252 - 0.2
1,891,360 - 0.7
1,891,360 - 0.4
1,891,362 - 2.4
1,891,366 + 0.9
1,891,378 + 0.6
1,891,383 - 0.2
1,891,388 + -0.8
1,891,390 + 0.6
1,891,393 - 1.1
1,891,404 + 0.5
1,891,406 + 2.1
1,891,410 + -0.0
1,891,411 - 0.7
1,891,428 + 0.4
1,892,153 + 12685 mRNA_4317 0.46 -0.6
1,892,287 - 12685 mRNA_4317 0.58 0.4
1,892,425 - 12685 mRNA_4317 0.71 0.3
1,893,029 - 12686 mRNA_4318 0.15 -0.5
1,893,031 + 12686 mRNA_4318 0.16 -0.2
1,893,177 - 12686 mRNA_4318 0.28 0.3
1,893,183 + 12686 mRNA_4318 0.29 0.6
1,893,439 - 12686 mRNA_4318 0.51 0.5
1,893,616 + 12686 mRNA_4318 0.67 2.3