Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4273

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4272: 12640 - K02433 gatA, QRSL1 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 1765138 to 1767269 12640 mRNA_4273: 12641 - BLAST cellular morphogenesis-related protein [Monilioph..., at 1767656 to 1771232 12641 mRNA_4274: 12642 - K01720 prpD 2-methylcitrate dehydratase, at 1771477 to 1773946 12642

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,767,377 + 1.5
1,767,391 - 0.1
1,767,393 + 0.7
1,767,411 - 1.2
1,767,417 - 3.0
1,767,424 + -0.5
1,767,424 + 0.9
1,767,424 + 1.8
1,767,451 + -0.1
1,767,467 + 0.3
1,767,536 - 2.4
1,767,572 + 1.5
1,767,590 + 0.7
1,767,733 - 1.0
1,767,751 + 1.7
1,767,815 - 1.4
1,767,865 - -0.2
1,768,053 + 12641 mRNA_4273 0.11 -0.6
1,768,056 + 12641 mRNA_4273 0.11 -0.6
1,768,061 - 12641 mRNA_4273 0.11 0.1
1,768,165 + 12641 mRNA_4273 0.14 0.0
1,768,174 + 12641 mRNA_4273 0.14 1.2
1,768,180 - 12641 mRNA_4273 0.15 -0.5
1,768,195 - 12641 mRNA_4273 0.15 0.9
1,768,281 - 12641 mRNA_4273 0.17 -1.0
1,768,425 + 12641 mRNA_4273 0.21 -0.1
1,768,543 - 12641 mRNA_4273 0.25 1.2
1,768,906 - 12641 mRNA_4273 0.35 -0.7
1,769,048 - 12641 mRNA_4273 0.39 0.3
1,769,197 - 12641 mRNA_4273 0.43 0.1
1,769,343 - 12641 mRNA_4273 0.47 1.6
1,769,982 + 12641 mRNA_4273 0.65 1.3
1,770,043 - 12641 mRNA_4273 0.67 0.5
1,770,048 + 12641 mRNA_4273 0.67 -0.6
1,770,485 - 12641 mRNA_4273 0.79 0.7
1,770,485 + 12641 mRNA_4273 0.79 -0.4
1,770,678 - 12641 mRNA_4273 0.84 0.6
1,770,681 - 12641 mRNA_4273 0.85 0.2
1,770,686 + 12641 mRNA_4273 0.85 0.2
1,770,942 - 0.3
1,771,054 - -0.1
1,771,093 + 0.0
1,771,093 + 0.4
1,771,108 - 1.1
1,771,117 - 0.2
1,771,210 - 0.6
1,771,232 - 1.2
1,771,234 + -1.4
1,771,242 - 0.3
1,771,245 + 0.1
1,771,259 + -0.3
1,771,382 + -0.6
1,771,404 - 0.4
1,771,413 - 1.0
1,771,427 + 1.0
1,771,449 + 0.1
1,771,557 - 1.7
1,771,578 - 1.0
1,771,699 - 0.6
1,771,702 + 0.4
1,771,706 + 1.8
1,771,715 + 0.4
1,771,880 + 12642 mRNA_4274 0.16 -2.1
1,772,023 - 12642 mRNA_4274 0.22 -2.4