Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4239

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4238: 12606 - KOG1105 Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1, at 1689549 to 1691062 12606 mRNA_4239: 12607 - Hypothetical Protein, at 1691409 to 1692539 12607 mRNA_4240: 12608 - KOG1700 Regulatory protein MLP and related LIM proteins, at 1692949 to 1695625 12608

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,690,531 - 12606 mRNA_4238 0.65 -0.2
1,691,154 + -0.6
1,691,556 - 12607 mRNA_4239 0.13 -1.4
1,691,721 + 12607 mRNA_4239 0.28 0.0
1,691,795 - 12607 mRNA_4239 0.34 0.3
1,691,895 + 12607 mRNA_4239 0.43 0.4
1,692,026 - 12607 mRNA_4239 0.55 0.9
1,692,027 + 12607 mRNA_4239 0.55 0.9
1,692,031 - 12607 mRNA_4239 0.55 0.1
1,692,108 + 12607 mRNA_4239 0.62 -1.4
1,692,124 - 12607 mRNA_4239 0.63 1.0
1,692,126 + 12607 mRNA_4239 0.63 0.6
1,692,189 - 12607 mRNA_4239 0.69 0.9
1,692,242 - 12607 mRNA_4239 0.74 0.6
1,692,331 + 12607 mRNA_4239 0.82 0.1
1,692,480 - 2.0
1,692,568 + -0.9
1,692,579 - 0.1
1,692,612 - 0.2
1,692,737 + 0.4
1,692,878 + 1.9
1,693,023 - 0.5
1,693,029 - 0.7
1,693,045 - 0.0
1,693,054 + -0.2
1,693,077 - -0.3