Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4236

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4235: 12603 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1682242 to 1685142 12603 mRNA_4236: 12604 - HMMPfam-pinin/SDK/memA/ protein conserved region-PF04696, at 1685363 to 1686839 12604 mRNA_4237: 12605 - K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1, at 1687514 to 1688995 12605

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,684,435 - 12603 mRNA_4235 0.76 -1.6
1,684,570 - 12603 mRNA_4235 0.80 -0.6
1,684,686 - 12603 mRNA_4235 0.84 -0.3
1,684,694 + 12603 mRNA_4235 0.85 0.6
1,684,920 - -0.9
1,684,997 - -0.5
1,685,237 - -1.8
1,685,238 + -0.7
1,685,460 - 1.4
1,685,478 + -0.4
1,685,482 + 1.3
1,685,610 - 12604 mRNA_4236 0.17 0.9
1,685,611 - 12604 mRNA_4236 0.17 0.3
1,686,479 - 12604 mRNA_4236 0.76 1.1
1,686,777 - 0.7
1,686,785 + -0.5
1,686,865 + -0.1
1,686,900 - 1.2
1,686,905 - -0.2
1,686,911 - 0.1
1,686,922 - 0.7
1,686,946 + 1.0
1,686,947 + 0.3
1,686,951 + 1.1
1,686,972 - 0.3
1,686,974 + 0.1
1,686,980 + 0.3
1,687,016 - 1.3
1,687,034 + -0.3
1,687,047 - 1.5
1,687,052 - 0.9
1,687,082 + 0.5
1,687,096 + -0.6
1,687,102 - -0.2
1,687,121 - -0.7
1,687,122 + -0.2
1,687,122 + -0.2
1,687,123 - 0.5
1,687,133 + -2.6
1,687,142 + 1.0
1,687,253 + -0.6
1,687,279 + 0.2
1,687,427 - 1.3
1,687,571 - 0.2