Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4166

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4165: 12533 - Hypothetical Protein, at 1513991 to 1515479 12533 mRNA_4166: 12534 - K12597 AIR1_2 protein AIR1/2, at 1515878 to 1517607 12534 mRNA_4167: 12535 - Hypothetical Protein, at 1518124 to 1518875 12535

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,515,006 - 12533 mRNA_4165 0.68 -0.5
1,515,020 + 12533 mRNA_4165 0.69 2.0
1,515,030 - 12533 mRNA_4165 0.70 -0.5
1,515,274 - 12533 mRNA_4165 0.86 0.8
1,515,310 + 12533 mRNA_4165 0.89 2.1
1,515,318 + 12533 mRNA_4165 0.89 1.0
1,515,321 + 12533 mRNA_4165 0.89 0.4
1,515,332 + 1.3
1,515,464 - -0.2
1,515,467 + -0.5
1,515,481 + -0.1
1,515,485 + 0.0
1,515,604 - 0.5
1,515,612 - 0.6
1,515,622 + -0.8
1,515,631 + -1.9
1,515,634 + -0.3
1,515,641 - -0.1
1,515,734 - 0.4
1,515,738 - 0.9
1,515,748 + 0.9
1,515,756 - 0.4
1,515,758 + -0.1
1,515,879 - -0.2
1,515,897 - 0.7
1,515,910 - 1.4
1,515,912 + 0.7
1,515,925 + -2.0
1,515,925 + 0.1
1,515,925 + -0.1
1,516,060 + 12534 mRNA_4166 0.11 -0.1
1,516,063 + 12534 mRNA_4166 0.11 0.8
1,516,090 + 12534 mRNA_4166 0.12 -0.5
1,516,540 - 12534 mRNA_4166 0.38 1.0
1,516,653 + 12534 mRNA_4166 0.45 1.5
1,516,666 + 12534 mRNA_4166 0.46 0.2
1,517,013 - 12534 mRNA_4166 0.66 -0.1
1,517,075 + 12534 mRNA_4166 0.69 0.4
1,517,371 - 12534 mRNA_4166 0.86 0.5
1,517,653 + -0.1
1,517,967 + -0.8
1,517,988 + -1.7
1,518,080 - 1.0
1,518,087 - 0.0
1,518,090 - 0.1
1,518,098 + 2.4
1,518,099 + 1.2
1,518,105 + 0.1
1,518,107 + 0.8
1,518,236 - 12535 mRNA_4167 0.15 0.0
1,518,237 + 12535 mRNA_4167 0.15 -0.4
1,518,251 - 12535 mRNA_4167 0.17 2.3
1,518,253 + 12535 mRNA_4167 0.17 0.1
1,518,254 + 12535 mRNA_4167 0.17 1.2
1,518,257 - 12535 mRNA_4167 0.18 -0.2
1,518,258 + 12535 mRNA_4167 0.18 0.2
1,518,406 - 12535 mRNA_4167 0.38 0.3
1,518,424 - 12535 mRNA_4167 0.40 0.8
1,518,558 - 12535 mRNA_4167 0.58 -0.7