Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4093

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4092: 12460 - KOG0941 E3 ubiquitin protein ligase, at 1337124 to 1338710 12460 mRNA_4093: 12461 - Hypothetical Protein, at 1338946 to 1342318 12461 mRNA_4094: 12462 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1343294 to 1345409 12462

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,338,515 + 12460 mRNA_4092 0.88 -0.9
1,338,653 - -1.0
1,338,788 + 0.1
1,339,497 + 12461 mRNA_4093 0.16 0.3
1,339,770 - 12461 mRNA_4093 0.24 -1.1
1,339,783 + 12461 mRNA_4093 0.25 -0.2
1,339,814 - 12461 mRNA_4093 0.26 -1.9
1,340,063 - 12461 mRNA_4093 0.33 -0.5
1,340,522 - 12461 mRNA_4093 0.47 -1.6
1,340,557 - 12461 mRNA_4093 0.48 -1.7
1,340,844 + 12461 mRNA_4093 0.56 -1.6
1,341,147 + 12461 mRNA_4093 0.65 -0.0
1,341,153 + 12461 mRNA_4093 0.65 1.1
1,341,271 + 12461 mRNA_4093 0.69 -2.0
1,341,278 - 12461 mRNA_4093 0.69 -1.3
1,341,285 + 12461 mRNA_4093 0.69 0.8
1,341,441 + 12461 mRNA_4093 0.74 -1.3
1,341,472 + 12461 mRNA_4093 0.75 0.3
1,341,604 + 12461 mRNA_4093 0.79 -0.7
1,341,620 + 12461 mRNA_4093 0.79 0.3
1,341,780 - 12461 mRNA_4093 0.84 1.8
1,341,901 - 12461 mRNA_4093 0.88 1.3
1,341,902 + 12461 mRNA_4093 0.88 1.1
1,342,035 - 0.0
1,342,040 + -0.2
1,342,060 - -0.2
1,342,077 - 1.3
1,342,080 - 0.6
1,342,092 + 2.0
1,342,170 - -0.5
1,342,198 + -0.5
1,342,204 + -0.3
1,342,216 + 0.8
1,342,223 - -0.4
1,342,248 - 0.3
1,342,268 - -0.6
1,342,272 + -0.7
1,342,361 - -0.9
1,342,368 - 0.3
1,342,374 - -1.0
1,342,375 - 2.7
1,342,381 - 0.4
1,342,381 - -0.2
1,342,383 - -0.6
1,342,384 - 0.4
1,342,385 + 0.2
1,342,389 + 0.1
1,342,390 + 0.6
1,342,403 - 0.0
1,342,403 + -1.4
1,342,409 + -0.9
1,342,409 - 1.0
1,342,411 + 1.3
1,342,412 - 0.1
1,342,413 - -0.0
1,342,417 - 0.6
1,342,418 + 1.1
1,342,418 + 0.6
1,342,422 - -0.1
1,342,424 - -0.2
1,342,424 + 0.7
1,342,431 + -1.1
1,342,441 + -1.0
1,342,442 - 0.3
1,342,444 - 0.5
1,342,454 - -0.9
1,342,459 + 0.2
1,342,461 - 0.2
1,342,474 + 0.0
1,342,586 + 0.4
1,342,592 - -0.7
1,342,593 + 1.3
1,342,596 + 0.7
1,342,623 - -0.2
1,342,628 - -0.7
1,342,653 + -1.5
1,342,656 - -0.5
1,342,658 + -0.0
1,342,789 - 1.1
1,342,803 + 0.9
1,342,817 - 0.4
1,342,933 - -0.0
1,342,947 - 1.1
1,342,953 - -0.2
1,342,964 - 0.9
1,342,972 - 0.4
1,342,976 - 0.3
1,342,976 - 0.5
1,342,977 + -0.7
1,342,983 - 0.3
1,342,989 + 0.7
1,343,001 + 1.0
1,343,008 - -0.3
1,343,013 - 1.8
1,343,015 + 0.0
1,343,016 + -1.5
1,343,026 + -0.5
1,343,026 - 0.8
1,343,031 + -1.2
1,343,046 + 0.3
1,343,168 + -0.1
1,343,281 - -0.2
1,343,291 + -1.5
1,343,298 + 1.6