Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4056

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4054: 12422 - KOG2973 Uncharacterized conserved protein, at 1248233 to 1250054 12422 mRNA_4055: 12423 - HMMPfam-Glyoxalase-like domain-PF12681,SUPERFAMILY--SSF54593, at 1250163 to 1250733 12423 mRNA_4056: 12424 - BLAST tRNA(His) guanylyltransferase [Kwoniella heveanensis ..., at 1250945 to 1252332 12424 mRNA_4057: 12425 - Hypothetical Protein, at 1252817 to 1253970 12425

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,250,276 + 12423 mRNA_4055 0.20 -1.7
1,250,320 - 12423 mRNA_4055 0.27 -0.8
1,250,594 - 12423 mRNA_4055 0.75 0.8
1,250,622 + 12423 mRNA_4055 0.80 0.0
1,250,623 - 12423 mRNA_4055 0.81 -0.5
1,250,623 - 12423 mRNA_4055 0.81 0.2
1,250,895 - 0.9
1,250,898 - 0.1
1,250,898 + 0.1
1,251,039 - -0.8
1,251,047 - -0.0
1,251,054 + -0.1
1,251,065 + -0.0
1,251,074 - -1.0
1,251,365 + 12424 mRNA_4056 0.30 0.2
1,251,666 - 12424 mRNA_4056 0.52 2.7
1,251,720 - 12424 mRNA_4056 0.56 1.0
1,251,769 + 12424 mRNA_4056 0.59 -0.6
1,251,935 - 12424 mRNA_4056 0.71 0.4
1,252,092 - 12424 mRNA_4056 0.83 0.1
1,252,098 - 12424 mRNA_4056 0.83 -1.5
1,252,271 + -1.4
1,252,556 + -0.4
1,252,686 + -0.0
1,252,848 - -0.5
1,253,032 + 12425 mRNA_4057 0.19 -1.5
1,253,186 + 12425 mRNA_4057 0.32 -0.5
1,253,267 + 12425 mRNA_4057 0.39 -1.2