Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4017

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4016: 12384 - K01250 rihA pyrimidine-specific ribonucleoside hydrolase, at 1166386 to 1167803 12384 mRNA_4017: 12385 - K13333 PLB lysophospholipase, at 1168260 to 1170390 12385 mRNA_4018: 12386 - K09500 CCT8 T-complex protein 1 subunit theta, at 1170619 to 1173012 12386

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,167,577 - 12384 mRNA_4016 0.84 -0.5
1,167,720 - 0.7
1,167,752 - 1.4
1,167,871 - 1.3
1,167,918 - -1.3
1,167,972 - 1.7
1,168,013 - 0.5
1,168,036 - -0.2
1,168,186 - 0.2
1,168,193 - 0.3
1,168,198 - 0.7
1,168,329 - 1.6
1,168,331 - -0.7
1,168,467 - 0.6
1,168,494 + 12385 mRNA_4017 0.11 2.0
1,168,518 + 12385 mRNA_4017 0.12 1.0
1,168,639 - 12385 mRNA_4017 0.18 -0.6
1,168,665 - 12385 mRNA_4017 0.19 0.2
1,168,737 - 12385 mRNA_4017 0.22 -0.5
1,169,023 - 12385 mRNA_4017 0.36 1.9
1,169,079 + 12385 mRNA_4017 0.38 1.5
1,169,356 + 12385 mRNA_4017 0.51 -1.0
1,169,394 + 12385 mRNA_4017 0.53 0.0
1,170,136 - 12385 mRNA_4017 0.88 0.4
1,170,338 + 2.6
1,170,407 + -0.6
1,170,574 + 2.6