Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4013

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4012: 12380 - KOG2370 Cactin, at 1149929 to 1152487 12380 mRNA_4013: 12381 - HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317, at 1153401 to 1154671 12381 mRNA_4014: 12382 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 1154900 to 1159801 12382

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,152,536 - 0.6
1,152,538 + 0.1
1,152,544 + -1.7
1,152,549 + 0.3
1,152,692 + 0.6
1,152,700 + 0.9
1,152,846 + 0.6
1,152,995 + 0.6
1,153,410 + 0.8
1,153,836 - 12381 mRNA_4013 0.34 0.9
1,153,989 - 12381 mRNA_4013 0.46 -1.6
1,154,559 - 0.3
1,154,590 + 1.7
1,154,594 - 2.0
1,154,680 - 0.5
1,154,732 + 1.8
1,154,738 - 0.9
1,154,742 - 1.7
1,154,742 - 2.4
1,154,745 + 2.5
1,154,745 - 0.9
1,154,748 - 1.8
1,154,758 - 0.9
1,154,761 - 1.5
1,154,764 + 0.8
1,154,764 + 1.2
1,154,770 + 0.0
1,154,778 - -0.2
1,154,788 - 0.5
1,154,788 - -0.3
1,154,789 - 0.4
1,154,790 - -0.3
1,154,793 + 0.8
1,154,798 + -0.3
1,154,813 + 2.0
1,154,911 - 2.1
1,154,913 + 0.9
1,154,920 + 1.3
1,154,936 - 0.5
1,154,952 + 0.8
1,154,956 + 1.7
1,154,956 + 0.8
1,154,958 - 2.2
1,154,962 + 0.8
1,155,100 - 1.5
1,155,109 + 1.8
1,155,119 + 2.1
1,155,129 - 1.9
1,155,557 - 12382 mRNA_4014 0.13 0.2