Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3993

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3993: 12361 - KOG0627 Heat shock transcription factor, at 1098297 to 1099754 12361 mRNA_3994: 12362 - K11484 HOS3 histone deacetylase HOS3, at 1100356 to 1102987 12362

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,097,440 + 1.0
1,097,443 + 2.2
1,097,449 + -0.1
1,097,452 - -0.6
1,097,453 - 0.0
1,097,453 + 0.7
1,097,461 + 1.5
1,097,467 - 0.5
1,097,468 - 0.4
1,097,469 + -0.1
1,097,470 - -0.3
1,097,472 - -0.2
1,097,488 - 2.5
1,097,489 + 0.6
1,097,491 + -0.7
1,097,496 - -0.3
1,097,503 - -0.0
1,097,505 + 0.2
1,097,516 - -0.8
1,097,533 - -0.3
1,097,541 + -0.6
1,097,573 - 0.3
1,097,583 + 0.0
1,097,601 + 1.3
1,097,603 + 0.4
1,097,607 + -2.6
1,097,613 + 0.9
1,097,622 - -0.3
1,097,722 + 0.1
1,097,729 - 0.5
1,097,761 - -0.3
1,097,773 - 1.0
1,097,778 - -0.5
1,097,782 - -0.1
1,097,800 - 1.6
1,097,801 - 1.5
1,097,806 - -0.6
1,097,811 - -0.4
1,097,812 + -0.3
1,097,817 - 1.5
1,097,848 + 0.1
1,097,850 - -0.6
1,097,880 + 0.5
1,097,901 - -1.3
1,097,908 - -1.1
1,097,912 - -0.6
1,097,952 + -1.3
1,098,007 + 0.2
1,098,043 - 2.3
1,098,052 + -0.6
1,098,058 - 0.2
1,098,070 + 0.4
1,098,071 + 1.2
1,098,091 - 1.2
1,098,100 + 0.9
1,098,129 + 0.2
1,098,133 - 0.0
1,098,153 - 0.9
1,098,158 - -0.0
1,098,158 + -0.3
1,098,166 - -0.2
1,098,172 + -2.0
1,098,180 - -0.4
1,098,186 + 0.2
1,098,201 - 0.8
1,098,209 - 1.3
1,098,210 - -0.5
1,098,213 + 0.9
1,098,219 + 1.3
1,098,228 - -0.5
1,098,231 - 0.1
1,098,231 + 0.4
1,098,386 + -0.3
1,098,820 + 12361 mRNA_3993 0.36 -0.6
1,099,091 - 12361 mRNA_3993 0.54 1.1
1,099,111 + 12361 mRNA_3993 0.56 0.3
1,099,113 + 12361 mRNA_3993 0.56 -0.7
1,099,222 + 12361 mRNA_3993 0.63 -1.6
1,099,269 - 12361 mRNA_3993 0.67 0.8
1,099,486 - 12361 mRNA_3993 0.82 1.7
1,099,731 - 0.3
1,099,778 - -0.4
1,099,791 + -0.0
1,099,793 + 0.6
1,099,822 + 0.5
1,099,903 + -0.1
1,099,904 + -0.3
1,099,913 - 1.1
1,099,923 - 0.1
1,099,960 + 1.3
1,099,960 + 2.3
1,099,964 - 0.2
1,099,973 - -0.1
1,099,977 - 0.7
1,099,978 + 0.1
1,099,989 - 0.4
1,100,016 + 1.8
1,100,021 + -1.8
1,100,044 - 2.3
1,100,045 + -0.3
1,100,056 + -0.3
1,100,078 + 1.9
1,100,094 - 0.3
1,100,124 + 0.5
1,100,200 + 0.3
1,100,203 - -0.6
1,100,245 - 0.5
1,100,250 - 0.4
1,100,410 + -0.2